RNA id: XM_036938308.1


Basic Information

Item Value
RNA id XM_036938308.1
length 1706
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC118937728
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13097545 ~ 13127127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTGGAGAGAGTGATCTGATTCTTCTGAAGCGCatgtcagagaggaggaggaggagggagggaatgaaccaggaagagagagagagagagagagagaaggcagccTCCGGTTGACAGTCCATGGAGGTCTGCAGGATCTCCAGGACCAGGAACCATCCCTGGCTGCTGCGCCTGGTGTGTGTTTCGCCTGCTGCTATCACAAGGGGCTGCAGGGCTTTCATCACCACTGAATGGTGTgctgtcctgatgtctctctcAAAGCCAGGAGGACTGACGTCAGAGACTTTCTCTGGATCAGCCCCTGAGAGCTGTAGGATCCACCCAGGAGGATGCAGGGCCTCAGGAGGAACAGCTCTAGCCAGCTCTGACTTCTGGTGGGGCGGGACAGCTGGTGTTGTGAATCAGGCCGCTATAGTGCCAGACACGGCTTCTTCCCAACACCAGGGTCACACCCCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAGCAGATCACAGCAGGACAGATCAAAATGCATGCCGAGACTAGTGGAGGATGTGTCTTTCAAAAACAGACTAGTCGAAGTTCATTAAAATGGGGCATAAGAGGAGCATTTGAGCATGGGCCCAAAGCACAACCACCATTGTTTAATTCTCAATTGTTATTAAAGTAGAGTTGTATTGTATTGACTTGCCCTATGACAGCTTCTGTGTGTCTGCACACTAGGACTAGGATTCAACATCAGTGAACTATCAGAGCGTAGTACAACTAGAGAGAGGACAGTGCTGATGGGAATAGCATGAAATGAATAATCAATCAAAATGAAATGTGTTCCGGTTTATGTAAAAGCATGACAAATGAAAGGCTGGGTGTATTCCTTTGTCTGGGATTAAATACAAAATGGATTTTGATGTTAGTCTCAGTCTTAGTATCAGTACGCTTTGTTGGCATCCCTCGGTGCTgcttttatttcactttatattaTATACTTTTATTAAACTCATCAAAGGACTCTTTATTTGTTATTCGTTACTTAACAAATTGTATGTTTTCATTGTGTGGTGGTAGTTTGTGAGTGAAAGTGTTTTTGCATCATTATTCCAATAATAAAGTAGGATACATGTGAACAACTACAGTTATGTATCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131416 lncRNA downstream 103299 12993931 ~ 12994247 (-) True G114514
TU131415 lncRNA downstream 104956 12992298 ~ 12992590 (-) True G114513
TU131413 lncRNA downstream 108917 12988420 ~ 12988629 (-) True G114511
TU131412 lncRNA downstream 109295 12987945 ~ 12988251 (-) True G114510
TU131408 lncRNA downstream 135604 12943485 ~ 12961942 (-) True G114506
TU131706 lncRNA upstream 13822 13140947 ~ 13141231 (-) True G114739
TU131708 lncRNA upstream 24067 13151192 ~ 13153857 (-) True G114741
TU131710 lncRNA upstream 31466 13158591 ~ 13159374 (-) True G114743
TU131714 lncRNA upstream 40616 13167741 ~ 13168196 (-) True G114747
TU131729 lncRNA upstream 73695 13200820 ~ 13201048 (-) True G114759
XM_036938298.1 mRNA downstream 3118 13086169 ~ 13094428 (-) False LOC110507534
XM_036938302.1 mRNA downstream 3564 13088704 ~ 13093982 (-) False LOC110507534
XM_036938293.1 mRNA downstream 3715 13086169 ~ 13093831 (-) False LOC110507534
XM_036938300.1 mRNA downstream 3715 13086169 ~ 13093831 (-) False LOC110507534
XM_036938296.1 mRNA downstream 3913 13086169 ~ 13093633 (-) False LOC110507534
XM_036938328.1 mRNA upstream 49040 13176165 ~ 13188178 (-) False abhd5a
XM_036938337.1 mRNA upstream 49040 13176165 ~ 13188351 (-) False abhd5a
XM_021587657.2 mRNA upstream 49040 13176165 ~ 13188923 (-) False abhd5a
XM_021587639.2 mRNA upstream 49040 13176165 ~ 13188969 (-) False abhd5a
XM_021587671.2 mRNA upstream 49040 13176165 ~ 13189012 (-) True abhd5a
TU131498 other downstream 3781 13092092 ~ 13093765 (-) True LOC110507534
TU131319 other downstream 358389 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 388231 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 483866 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 512406 12584027 ~ 12585140 (-) True G114390
TU131755 other upstream 168708 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 203623 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 203623 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 203623 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 367323 13494448 ~ 13500283 (-) True LOC110534058