RNA id: XM_036938328.1


Basic Information

Item Value
RNA id XM_036938328.1
length 2484
RNA type mRNA
GC content 0.47
exon number 10
gene id abhd5a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13176165 ~ 13189012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTACACCCTATCTGACTAACTCATGCCGTAGAGAAAAAGTTTGTTTTTTGGCTGCAGACTGGCTCAGCGAATACTGATGTTTCTTGGTATTCATAGTCTTTTCTACAATTTGTTGAGTGTCCTGGACAGAACGTTGAGGTCCTGGACTTCCACGGCATGGATCACCAGCTGGCTGCCCTCCTGGTGCCCCACCTCCCAGAACCAGCTCAAGACTGCAGAGGAGAAGATGCTGCAATGCATCACAGGCAAGGTGTCCCAGCAGTATGTCCCAATCTCGGATGGTAACATGCTGTGGACCCTCACATTGAATGGAAACATGAAGAACCAGACTCCCCTGGTGCTGCTGCATGGCTTCGGTGGAGGGGTGGGCCTGTGGGCCCTCAACCTAGACGCCCTGGCCCAACAGAGGCCCGTCTATGCCTTTGACCTGCTGGGCTTCGGCCAGAGCAGCAGGCCCTACTTCAGCTCCGACGCCAAGGAAGCTGAGGCCCAGTTTGTGGACTCCATCGAGCAGTGGAGGGCTAAAGTCGGCCTGGAAGCCATGGTCATGCTGGGACATAACTTTGGAGGTTATTTGGCAGCTGCTTATTCGCTCAAGTATCCCACCAGGGTGCAACATATGGTGCTGGTTGAGCCGTGGGGCTTACCTGAGCGTCCAGACACAGAAGACCAGGACAGGCCCACCCCCGTGTGGATCAAAGCCCTGGGAGCCATGTTGAGCCCGTTCAACCCCCTGGCAGGGCTACGACTGGTGGGGCCACTGGgtcccacacttgtttcagcTCTAAGACCAGACTTCAAGAAGAAATACTTGTCCATGTTCAACGACGATACGGTCACAGAGTATATCTATCACCTGAATGTCCAGACTCCCAGTGGTGAGACAGCCTTCAAGAACATGACCATCCCATACGGGTGGGCCAAGAGGCCTATGCTGCAGAGGATTGGCCTGCTCCATGCTGACATCCCTATTACTGTGATATATGGGTCACGCTCCAGCATCGACGGTAACTCGGGCAACGCTATCAAAGAAATGAGGCCAAACTCTCATGTGGAGATCATAgctatCAGAGGAGCGGGCCACTACGTCTATGCTGACCAGCCAGAGGACTTCAACCACAGAGTGCTTCAGGTCCTCAGTAGTAGACCTACCACCACCAGCACAGCAGACCTGCTAACTAGGGAAGGACCCCGTGTTGAAAAGATGATTCTCCTGGATTGTTTGGTTTGACACTTGTATTCATTCTACTGACAAAAGAGAATGGCTCATAGTTGTTACTGCTTGTTGTGATTTTGGTCATTTTGTGATGAGTGTGTCAGCTTTTAATCTGCTGTTTTAAGAAATGTGATTCTCAGAACGATACAGACTACAATTTGACCACTTGTGGATTATTCTCATTCTGTCAAAGATCCTTTGTGAGATTATTTAGAAATGTGTCATTTGCGTCATAACAGCTCATGTAGATATGACCACGGACCATAGAGTTTTCATTTAAAAACACATGATTGTGGAACTTCTAGACCTCTGGTTTTGCTGATGGGCTCCTGAgtgacacagcggtctaaggcacttcatctcAGTGCTTCATCTcagttccaggctgtatcacaaccggctgtgattggcagTCCCGTAGGGAGGCGcaccattggcccagcgtcgttagggtttggccggggtaggccgtcattgcaaataagaatttcttcttaactgacttgcgtagttaaggttaaataaatcccAAATATAAAAAGATTTCCCCATGACAAGCGAAGTGCCTTTTTAATGACCTAGTATGTGACCAGGGACTACAGTCATTGCTGCTGCTTTTTGGTCTTGTCTTTTTATGGGTCCTTTTGTAAGTGGTCGTTTTCACTTCAAGATGTTCTAATTATGTTCTCATTCATAGTGTTTTGGCTCTTGTTGTGGTCTAGTGTTAAATAATCCACGTATTAATAGCTAGCGTGTGCAGGTGAAGGAAAACGCAGCATCAGAATCTAGTAATTGAAGATAACTACTCCATTCTTCTCAGCTGCCATTGTGGGGAAAGAAGGTTCGGCCTCAATAAATCCCATTCATTCATTGCAACAGTATTTGATAGTATTATTAGGCACCTGTCCAGGGTGTCTGGAAAAGCACAGTATCTAGGTCTAAGATCAGTTAGCATAGCTATAGCAGCCTGTCCTCTTATTTCATATAGGTGGCAGCTaatatctctgtgtgtgaagtTGCAGATTGGGTGAGTTACTTAGACTTTTACAGCCACTTTACCCAGTGCACCGTTTACTAGATGTGCTGAGCCCAAGGATAAGGTTTGATTAACTCCTGAACATGTGGATGCCTTTGTATTGTTGTCCTGTATATCATTGTAAGTCTCCAATCACAAGTCAATTACCGTGGGGAAGAACAAATGGTGCTTCTCTATTCATGTATTGTAAAATACCTGTAAATAATAAAGATTATATTATGATTTCCGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131714 lncRNA downstream 7969 13167741 ~ 13168196 (-) True G114747
TU131710 lncRNA downstream 16791 13158591 ~ 13159374 (-) True G114743
TU131708 lncRNA downstream 22308 13151192 ~ 13153857 (-) True G114741
TU131706 lncRNA downstream 34934 13140947 ~ 13141231 (-) True G114739
TU131416 lncRNA downstream 181918 12993931 ~ 12994247 (-) True G114514
TU131729 lncRNA upstream 12642 13200820 ~ 13201048 (-) True G114759
TU131732 lncRNA upstream 15967 13204145 ~ 13204557 (-) True G114762
TU131733 lncRNA upstream 17312 13205490 ~ 13205707 (-) True G114763
TU131750 lncRNA upstream 50796 13238974 ~ 13241834 (-) True G114780
TU131753 lncRNA upstream 58783 13246961 ~ 13248154 (-) True LOC118937744
XM_036938313.1 mRNA downstream 49038 13097545 ~ 13127127 (-) False LOC118937728
XM_036938308.1 mRNA downstream 49040 13097546 ~ 13127125 (-) True LOC118937728
XM_036938316.1 mRNA downstream 55686 13097546 ~ 13120479 (-) False LOC118937728
XM_036938298.1 mRNA downstream 81737 13086169 ~ 13094428 (-) False LOC110507534
XM_036938302.1 mRNA downstream 82183 13088704 ~ 13093982 (-) False LOC110507534
XR_005035136.1 mRNA upstream 58778 13246956 ~ 13250244 (-) False LOC118937744
XM_036938352.1 mRNA upstream 62128 13250306 ~ 13323543 (-) False LOC110513400
XM_036938358.1 mRNA upstream 62128 13250306 ~ 13323551 (-) False LOC110513400
XM_036938366.1 mRNA upstream 62128 13250306 ~ 13324680 (-) False LOC110513400
XM_036938379.1 mRNA upstream 128581 13316759 ~ 13319151 (-) False LOC118937736
TU131498 other downstream 82400 13092092 ~ 13093765 (-) True LOC110507534
TU131319 other downstream 437008 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 466850 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 562485 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 591025 12584027 ~ 12585140 (-) True G114390
TU131755 other upstream 107655 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 142570 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 142570 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 142570 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 306270 13494448 ~ 13500283 (-) True LOC110534058

Expression Profile