RNA id: TU131708


Basic Information

Item Value
RNA id TU131708
length 904
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G114741
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13151192 ~ 13153857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttgttgaggatggaggttctttctgtctttgttgtgttgaggatggaggttgtttctgtctttgttgtgttgaggatggaggttgtttctgtctttgttgtgttgaggatggaggttgtttctgtctttgttgtgttgaggatggaggttgtttaacatgctgtttcggtctttgttgtgttgaggatggaggttgtttctgtctttgttgtgttgaggatggaggttgtttctgtcttcgttgtgttgaggatggaggttgtttctgtctttgttgtgctgaggatggaggttgtttaacatgctgtttctgtctttgttgtgttgaggatggaggttgtttctgtctttgttgtgttgaggatggaggttgtttctgtctttgttgtgttgagggtgGAGGTTGTTTctttctttgttgtgttgaggatggaggttgtttaacatgctgtttcggtctttgttgtgttgaggatggaggttgtttcacatgctgtttctgtctttgttgtgatgaggatggaggctgtttcacatgctgtttctgtctttgttgtgatgaggatggaggctgtttcggtctttgttgtgttgaggatgaggttgtttaacatgctgtttctgtctttgttgtgttgaggatggaggctgtttctgtctttgttgtgatgaggatggaggctgtttctgtctttgttgtgttgaggatggaggttgtttaacatgctgtttctgtctttgttgtgttgaggatggaggttgtttaacatgatgtttctgtctttgttgtgttgaggatggaggttgttttacatgctgtttctgtctttgttgtgatgaggatggaggctgtttcggtctttgttgtgttgaggatggggttgtttaacatgctgtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131706 lncRNA downstream 9961 13140947 ~ 13141231 (-) True G114739
TU131416 lncRNA downstream 156945 12993931 ~ 12994247 (-) True G114514
TU131415 lncRNA downstream 158602 12992298 ~ 12992590 (-) True G114513
TU131413 lncRNA downstream 162563 12988420 ~ 12988629 (-) True G114511
TU131412 lncRNA downstream 162941 12987945 ~ 12988251 (-) True G114510
TU131710 lncRNA upstream 4734 13158591 ~ 13159374 (-) True G114743
TU131714 lncRNA upstream 13884 13167741 ~ 13168196 (-) True G114747
TU131729 lncRNA upstream 46963 13200820 ~ 13201048 (-) True G114759
TU131732 lncRNA upstream 50288 13204145 ~ 13204557 (-) True G114762
TU131733 lncRNA upstream 51633 13205490 ~ 13205707 (-) True G114763
XM_036938313.1 mRNA downstream 24065 13097545 ~ 13127127 (-) False LOC118937728
XM_036938308.1 mRNA downstream 24067 13097546 ~ 13127125 (-) True LOC118937728
XM_036938316.1 mRNA downstream 30713 13097546 ~ 13120479 (-) False LOC118937728
XM_036938298.1 mRNA downstream 56764 13086169 ~ 13094428 (-) False LOC110507534
XM_036938302.1 mRNA downstream 57210 13088704 ~ 13093982 (-) False LOC110507534
XM_036938328.1 mRNA upstream 22308 13176165 ~ 13188178 (-) False abhd5a
XM_036938337.1 mRNA upstream 22308 13176165 ~ 13188351 (-) False abhd5a
XM_021587657.2 mRNA upstream 22308 13176165 ~ 13188923 (-) False abhd5a
XM_021587639.2 mRNA upstream 22308 13176165 ~ 13188969 (-) False abhd5a
XM_021587671.2 mRNA upstream 22308 13176165 ~ 13189012 (-) True abhd5a
TU131498 other downstream 57427 13092092 ~ 13093765 (-) True LOC110507534
TU131319 other downstream 412035 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 441877 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 537512 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 566052 12584027 ~ 12585140 (-) True G114390
TU131755 other upstream 141976 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 176891 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 176891 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 176891 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 340591 13494448 ~ 13500283 (-) True LOC110534058

Expression Profile