RNA id: TU131753


Basic Information

Item Value
RNA id TU131753
length 1194
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC118937744
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13246956 ~ 13250244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGTCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCtggttggtttgtttgtttttaaaggGTATATGTTGAGTATGTATATATGttttaaaaagttatatttttgaaCGATCTGCTGTTTTAAAAATTATTCTGTGTTGAATTGGGCCCGTGAGTCTTTCGTTGGGGACTAACATCGCAGTGTgtgtcacacacacccacaccttaCTGGACACTGCAGGGTGAAGGTTTTACATTCAGGATTAGTGGTTCAGTAGAGCACATGCACCTTTCAGGAGAGATTCCTGTCTGTAAGCTTTAAAGGACTGGGCTTagtaaagaaggaaagaaatgggGTTGTAGGGAGATGTGGGGATATATTTTAAGGGCATTGGCAATAAGCTACATGTTGCAGCTATCTGTAAATCAacatatttttgttttatatttcaACCCTGTACAGCCTTAGATTGAAAGGCACCTCGGACTAAAAACGAACAGAGAAAGATATCTTGAGTATTTTTTTTCTTTTGAAACAAAATGTCTGTAAATAGAGATGTAAATATGGTGCTCTATATTTAGAGTCGGCAGAGTGAACCTCTTGGTGCAGAGCTGTAAGTATAGCCTTATTAGGAATGGGTGTCTCCAAGAAAAGAACATGACTTTATTCATGTCGGCCAGTCTGACCGTTGTCTTACCCAGATGTAAACAGCTGAATGACATGTGCATGTGTTATATGTTTAACATTATCCATCCAAGGACATCGAGAGAGGAAGAACCATCCACTGAATGTTACTGGACCAAACCATGTACTGGCTAAATGAAAATATGAAATGGCAGAATTATTCAATGTATTATTCTGTAGTTGATACCTGTTGTGAACAGTTACATATAGCTATGGTGATATCCTAAATAAAATGTTGTGGGAAATGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131750 lncRNA downstream 5127 13238974 ~ 13241834 (-) True G114780
TU131733 lncRNA downstream 41254 13205490 ~ 13205707 (-) True G114763
TU131732 lncRNA downstream 42404 13204145 ~ 13204557 (-) True G114762
TU131729 lncRNA downstream 45913 13200820 ~ 13201048 (-) True G114759
TU131714 lncRNA downstream 78765 13167741 ~ 13168196 (-) True G114747
TU131760 lncRNA upstream 12551 13260705 ~ 13261386 (-) True G114790
TU131783 lncRNA upstream 56534 13304688 ~ 13390936 (-) False LOC118937745
TU131792 lncRNA upstream 81381 13329535 ~ 13330477 (-) True G114814
TU131798 lncRNA upstream 91560 13339714 ~ 13343791 (-) False LOC110507671
TU131799 lncRNA upstream 91560 13339714 ~ 13343791 (-) True LOC110507671
XM_021587671.2 mRNA downstream 57949 13176165 ~ 13189012 (-) True abhd5a
XM_021587639.2 mRNA downstream 57992 13176165 ~ 13188969 (-) False abhd5a
XM_021587657.2 mRNA downstream 58038 13176165 ~ 13188923 (-) False abhd5a
XM_036938337.1 mRNA downstream 58610 13176165 ~ 13188351 (-) False abhd5a
XM_036938328.1 mRNA downstream 58783 13176165 ~ 13188178 (-) False abhd5a
XM_036938352.1 mRNA upstream 2152 13250306 ~ 13323543 (-) False LOC110513400
XM_036938358.1 mRNA upstream 2152 13250306 ~ 13323551 (-) False LOC110513400
XM_036938366.1 mRNA upstream 2152 13250306 ~ 13324680 (-) False LOC110513400
XM_036938379.1 mRNA upstream 68605 13316759 ~ 13319151 (-) False LOC118937736
XR_005035134.1 mRNA upstream 68605 13316759 ~ 13319153 (-) True LOC118937736
TU131498 other downstream 153196 13092092 ~ 13093765 (-) True LOC110507534
TU131319 other downstream 507804 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 537646 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 633281 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 661821 12584027 ~ 12585140 (-) True G114390
TU131755 other upstream 47679 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 82594 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 82594 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 82594 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 246294 13494448 ~ 13500283 (-) True LOC110534058

Expression Profile