RNA id: TU131792



Basic Information


Item Value
RNA id TU131792
length 919
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G114814
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13329535 ~ 13330477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctgagctatctttgttGCAGGTGCCTGGTAACAGATGAATAAGATCAGAAAAATGAAGAAACcagcacactgctcttgatagtgtGTAACCAAAAGGAAACGCTTGTCAAACGACACCATAAATAAATAGATATGTATAGTTTAGACAGACCTGAATTTCACACAAACGTGATTGACCAATCATTGGTAAATACACCGTAAGCACATTGATCACAGACCAAAAAATGTAATCTATCGTAGCGCATTAAATGTAACTGGTAATACCCATTTTTCAGAAATCAATCTTTAAAGGAAAATAGTATATTCAAAAATAACACATAGGCCTAGATATTTGTATTATTTGTCTCTCTGGCTGGACCAACTCCGTTATTATGGTGACAATGCAGACAATGTGAGACAATGTCAGGAAGTGAGACCAAGTTGACATGTTCAAATCCCCAAAACTGACACATAGAATAGTTAGGCAGGACTATACTCTAATCACAGACACAGAAAAAATatcaactatgacaacataaagACATGCTGTGCTGCAATATTATTAACTATAGTGCAGTAATGACTTGGAACATATTGTAAGATTTGTTCAAACCAATAACTATTGTGCAGTGTATGGGTCATACTTACACATAGACATTTCACAAATAAGGCCACAACAAAACATGGGATCAAAATGGAAATAGTGATACCAATGTGCAAGTTTTGCCATTCAAGTCCTTCAAACATTTGATTGGTCAAGCGCCGGACAACAGCACCCAGTCTCTATATGGACAGGATCTGCCTGCGGACCTTTTCAGAAGCCAGGTGGTCCAGGGTTCTCTGACGAGCTATAACCACCAGGACCAAGACTACCGTCAGGCACATCATGATCCCCTCAAACCTCCAGAATAGGCGCTCATCCATCCAAGAGGAACGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131760 lncRNA downstream 68149 13260705 ~ 13261386 (-) True G114790
TU131753 lncRNA downstream 81381 13246961 ~ 13248154 (-) True LOC118937744
TU131750 lncRNA downstream 87701 13238974 ~ 13241834 (-) True G114780
TU131733 lncRNA downstream 123828 13205490 ~ 13205707 (-) True G114763
TU131732 lncRNA downstream 124978 13204145 ~ 13204557 (-) True G114762
TU131798 lncRNA upstream 9237 13339714 ~ 13343791 (-) False LOC110507671
TU131799 lncRNA upstream 9237 13339714 ~ 13343791 (-) True LOC110507671
TU131781 lncRNA upstream 55692 13386169 ~ 13390936 (-) False LOC118937745
TU131780 lncRNA upstream 75562 13406039 ~ 13408902 (-) True LOC118937745
TU131851 lncRNA upstream 150039 13480516 ~ 13480903 (-) True G114865
XM_036938366.1 mRNA downstream 4855 13250306 ~ 13324680 (-) False LOC110513400
XM_036938358.1 mRNA downstream 5984 13250306 ~ 13323551 (-) False LOC110513400
XM_036938352.1 mRNA downstream 5992 13250306 ~ 13323543 (-) False LOC110513400
XR_005035134.1 mRNA downstream 10382 13316759 ~ 13319153 (-) True LOC118937736
XM_036938379.1 mRNA downstream 10384 13316759 ~ 13319151 (-) False LOC118937736
XR_005035137.1 mRNA upstream 9088 13339565 ~ 13353635 (-) False LOC110507671
XM_036938437.1 mRNA upstream 75405 13405882 ~ 13453664 (-) False LOC118937745
XM_036938506.1 mRNA upstream 166122 13496599 ~ 13500298 (-) False LOC110534058
XR_005035141.1 mRNA upstream 283148 13613625 ~ 13614107 (-) True LOC118937746
XM_036938552.1 mRNA upstream 320329 13650806 ~ 13661629 (-) False LOC118937748
TU131755 other downstream 6212 13295833 ~ 13323323 (-) True LOC110513400
TU131498 other downstream 235770 13092092 ~ 13093765 (-) True LOC110507534
TU131319 other downstream 590378 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 620220 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 715855 12610669 ~ 12613680 (-) True G114402
TU131788 other upstream 271 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 271 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 271 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 163971 13494448 ~ 13500283 (-) True LOC110534058
TU131946 other upstream 244058 13574535 ~ 13582606 (-) True G114928

Expression Profile