RNA id: TU131851


Basic Information

Item Value
RNA id TU131851
length 388
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G114865
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13480516 ~ 13480903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctccaactcaatcatcaagtttgcagacgacactacagtggtaggcttgattaccaacaacgacgagacggcctacagggaggaggtgagggccctcagagtgtggtgtcaggaaaataacctcacactcaacgtcaacaaaacaaaggagatgatcgtggacttcaggaaacagcagagggagcacccccctatccacatcgatggaacagtagtggagagggtagtacgttttaagttcctcggcgtacacatcacagacaaactgaattggtccacccacacagacagcttggtgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaattcggcttgtcaccaaaagcactcacaaacttttacagatgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131780 lncRNA downstream 71614 13406039 ~ 13408902 (-) True LOC118937745
TU131783 lncRNA downstream 89580 13304688 ~ 13390936 (-) False LOC118937745
TU131853 lncRNA upstream 12907 13493810 ~ 13494259 (-) True G114867
TU131918 lncRNA upstream 23731 13504634 ~ 13512209 (-) True G114911
TU131919 lncRNA upstream 24107 13505010 ~ 13558642 (-) False G114912
TU131920 lncRNA upstream 24107 13505010 ~ 13531390 (-) True G114912
TU131921 lncRNA upstream 26345 13507248 ~ 13511532 (-) True G114913
XM_036938437.1 mRNA downstream 26852 13405882 ~ 13453664 (-) False LOC118937745
XR_005035137.1 mRNA downstream 126881 13339565 ~ 13353635 (-) False LOC110507671
XM_036938366.1 mRNA downstream 155836 13250306 ~ 13324680 (-) False LOC110513400
XM_036938358.1 mRNA downstream 156965 13250306 ~ 13323551 (-) False LOC110513400
XM_036938506.1 mRNA upstream 15696 13496599 ~ 13500298 (-) False LOC110534058
XR_005035141.1 mRNA upstream 132722 13613625 ~ 13614107 (-) True LOC118937746
XM_036938552.1 mRNA upstream 169903 13650806 ~ 13661629 (-) False LOC118937748
XM_036938559.1 mRNA upstream 169903 13650806 ~ 13661631 (-) False LOC118937748
XM_036962010.1 mRNA upstream 347376 13828279 ~ 13914373 (-) False LOC110535394
TU131789 other downstream 148010 13330748 ~ 13332506 (-) False G114812
TU131790 other downstream 148010 13330748 ~ 13332506 (-) True G114812
TU131788 other downstream 148207 13330748 ~ 13332309 (-) False G114812
TU131755 other downstream 157193 13295833 ~ 13323323 (-) True LOC110513400
TU131498 other downstream 386751 13092092 ~ 13093765 (-) True LOC110507534
TU131917 other upstream 13545 13494448 ~ 13500283 (-) True LOC110534058
TU131946 other upstream 93632 13574535 ~ 13582606 (-) True G114928
TU131953 other upstream 172999 13653902 ~ 13661591 (-) True LOC118937748
TU132581 other upstream 481282 13962185 ~ 13976561 (-) True G115431
TU132617 other upstream 576639 14057542 ~ 14060958 (-) True LOC110535427

Expression Profile