RNA id: XM_021563428.2


Basic Information

Item Value
RNA id XM_021563428.2
length 2843
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC110490183
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43372725 ~ 43392160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCATAGAACAGTAAACGCGCTTACACGAGCGAGAAACGGAGGTGAATGACAAGATCTCCCTATTCTGCGCCTGGACGTCCAAACCTTGAAGAGAAACAAAGTCAtagtaaaatacattttaaaaatcaagACAAGGAAAGGGAGACCGTTTCAGTGCGTTTCAAGGAGGAATGCTAACGGATCACTTTGCACCGGCAAACGCTCACACTACTCTGATCAATTTGTAATAATTCAGCCGCCGCTTTCACACGGTGAAGGCAATGCGTAAAGTTGCATTCAGAAGTTGGTGAAAGTTGTCATCCTGGTGAGCAGATAATAGGACGGAGATGTTCAGTCCATTATGGGGTTTCTAATGTGGATGTAGAATACAAATCTTGGAAGAGTCTCCGGATGACCGACGCATTTTGGATGTTACCTTTCTTTGGGGCTATTCTCTGAGATTCCTTAGAGGCGGTTGCAATACAACACAATAAAAAAGGATTCCTCTCAGGTGGCACATCTGCCATGTTTGGATGGATTAGATTTTTACTATAACCAAGATTATCAAGAAATTGTTGATTTTTTTtgtggtttttctttattattgtgTCTGATCGAAACGACAACTGAAATTTTAGTACAACTGTCCAACTCACCTTCGGAATTACAATCATGAACATTGGCAGTTTTGTCCAATTATTATTCGCAGCGCTTCTTCAGCTTCATTTGTATGCAGTTAAGACAGCCCACATACCCAAGAACGGGGAGAAGAATAAAAATGACGTGGTCCCGTTCATGGACGTGTATAACAAGAGCATGTGTCGGACACGGGAGATGCTGGTGGACATCTTCCAGGAGTATCCAGATGAGATTGAGCACACCTACATCCCCTCGTGCGTGGTGCTCATGCGCTGCGCCGGATGCTGCAACGACGAGGCGCTCGAGTGTGTCCCCacagaaacaaaaaatgttaccATGGAGGTAATACAAGTGAAACAGAGAGTATCGCAGCATAATTTTCAGTTAAGTTTCACAGAACATCGAAAGTGTGAATGCAGACCAAAGCCAGAAGTTAAGGCAAAGAAAGAAAACCACTGTGAGCCTTGCTCAGAGAGAAGAAAGCGCTTGTTTGTGCAGGACCCTCTCACCTGTAAATGTTCCTGCAAATTCACACAATTAGACTGCAAGTCAAGACAACTTGAGTTAAACGAAAGAACTTGCAGATGTGACAAACcaaggagatgagatgaggagagggagagggggacaatGAAATGAAGGAATATTTTCTTGGCACAGCACTTTGAAACCTGAGGACGCATTCCCTGGATGGACAGAAAATTACAACGCAAGAAAGAACGAGCAAGAGAGAAcgatggagagagactgagataacAACATGCTGTTGTATATTtctaagatatatatatatatatatatattctaaaaGGACAATGACAATGTGTATTGCTGCTATGAAAAATGAAACATTATAAAGTGAACGAATGCGCCACTGTCTGGCGTGTGAATGGGACAAATGTTTAGTTGCCAGGGTGTTTGGGCCTGAACGTGGATAGGACTGAGAGTTTGTcagaatacattttatttgatttaacacttCACTGGATCTTGGTCTGCTGTGGATATGAGTATCttaaatatatctatataaaaACTAAGCGAAATTGTGACCATAACTTCACTGAGAGGTGCAACGGGAACATGTTTCTCCTCGGACCTCTGAAGGTCTAGAGAACTGTCAGAAAGCAGAACTACTTCCTCTACGGGGTGAAGTTTTTTTCACCACTGTATCGACTAACACCAGATAGGACTCGGTGTGAGAATACTTCTAAAGGGATATTAAATGTAGGTATATATGGAGACAAGACATAAATTAGATCTTCCGCCAAGGAACAGTGGCATTTAACTCACCACTGTCAAAATCAATGATCTCTATTTGCTTTGTTTAATGTCTTCATTTGTTTTCCAAAGATATAAttgcacacacacattaaagaATAGTCCATTATAGAAAAAATAACGATCTGTATATACTTACCTAATATCCCTTTGTCTAGTACACTACATCTAATTTATAATGCTAGAATATTTTCAGTATTCTGTGCATttaatttatatatttatatacagtgttatGGTTGATATTGATTTTACTTCTTCACCAGGCAATGTTATCACCAATCTGTTTGGCCATGGAAAACATTGAAAACTGTAGAcatatttctttctttttttaaagaagGAAAAAAAGAACAGAAAGATAAAACTTCAACATTCCTGAAAATGAGATATTGTATGTTTTGTTGGGCTAGAGGGGCTGGGAGCATGTGTCTTGATTTTGTTACAAACAAACCCCGCCACAAACATGTTTGTGAAAAGACGCACAGCCAACGTTGCAGTTTAAAGCTCGAGTCGGGACATGTGTTTTTGTACTTGAGTGACCGAAGACACGTCATGAGGAGGACTGAGGGCGTCTCACTGACCTTGGTCATCTTGGGCAAACTCCACAGTGAGAGACTGAGACTCTGGCCAGCCCAGTTTAGCCAGAACCGGACTTGGCATAGTGGGGAACCAGGAGCAGTAGAAGGAGATGATGCTCTCTACCCTTTTATGGAAAAAAGAAACATTCTATTTGTATTTCAGTGTCAGAAatacttttttgtttgttgtatCATGTACAGACACATTTTTAGTATATTTTCACATTAATATATTTATTGGTGCTTTAAAATTATCCATTTTACAATAGTAACATCGTTTTTTGTTTTTAGTGTAACTATTAACTATATTTATTTAgaaaatatattgttttttattAAACAGAAAATGCAGATCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167291 lncRNA downstream 12815 43353226 ~ 43359910 (-) True G145769
TU167288 lncRNA downstream 97441 43274719 ~ 43275284 (-) True G145766
TU167254 lncRNA downstream 147412 43224549 ~ 43225313 (-) True LOC110490140
TU167208 lncRNA downstream 187346 43135485 ~ 43185379 (-) True G145688
TU167202 lncRNA downstream 241623 43126340 ~ 43131102 (-) False LOC110490133
TU167390 lncRNA upstream 18208 43410367 ~ 43410694 (-) True G145863
TU167404 lncRNA upstream 37041 43429200 ~ 43429496 (-) True G145877
TU167409 lncRNA upstream 41322 43433481 ~ 43433697 (-) True G145882
TU167415 lncRNA upstream 47030 43439189 ~ 43439405 (-) True G145888
TU167422 lncRNA upstream 49618 43441777 ~ 43442509 (-) True G145893
XM_021563376.2 mRNA downstream 108480 43261166 ~ 43264245 (-) True LOC110490160
XM_021563355.2 mRNA downstream 135907 43227942 ~ 43236818 (-) False rrp15
XM_021563364.2 mRNA downstream 135907 43227945 ~ 43236818 (-) True rrp15
XM_021563342.2 mRNA downstream 147520 43197588 ~ 43225205 (-) False LOC110490140
LOC110490133 mRNA downstream 241580 43125698 ~ 43131145 (-) False LOC110490133
XR_002468679.2 mRNA upstream 212050 43604209 ~ 43608220 (-) True LOC110490218
XM_021563585.2 mRNA upstream 285996 43678155 ~ 43685499 (-) True LOC110490284
XM_036949324.1 mRNA upstream 306800 43698959 ~ 43726175 (-) False LOC110490292
XM_036949316.1 mRNA upstream 306800 43698959 ~ 43746646 (-) False LOC110490292
XM_036949306.1 mRNA upstream 306800 43698959 ~ 43760350 (-) False LOC110490292
TU167289 other downstream 100209 43270717 ~ 43272516 (-) True G145767
TU166468 other downstream 665446 42706818 ~ 42707279 (-) True G145010
TU165059 other downstream 1642303 41714546 ~ 41730422 (-) True LOC110489860
TU164135 other downstream 2509004 40863214 ~ 40863721 (-) True G142918
TU163224 other downstream 3131321 40224622 ~ 40241404 (-) False LOC110489653
TU168015 other upstream 383904 43776063 ~ 43783719 (-) True LOC110490298
TU168885 other upstream 1042631 44434790 ~ 44436117 (-) True LOC110490352
TU168978 other upstream 1179789 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other upstream 1179789 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other upstream 1179789 44571948 ~ 44578755 (-) False LOC110490449

Expression Profile