RNA id: XM_021576786.2


Basic Information

Item Value
RNA id XM_021576786.2
length 3708
RNA type mRNA
GC content 0.50
exon number 12
gene id slc6a15
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91754959 ~ 91779981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGAAGCACTTGTGTCTGTTTCATACAACACCACAGCGGCGATACAGCACCATATACGCATTAGCCTACAAGTGATGATGTCTGCCCCGTGTATGTGCTTCTGTCACAATTTCATTCCTTGATACGCATCATTCCGAAAAGGACCAACATCCCCATCTTACTGAAGACGACTAAAGCTTTTGGTGATAATGAAGAAATAAACAACTCCTTCACAACCCTCCATCACACACCTCCAATACAGAGTCTTTATCCGACAGTCCACCTTTAAGCCCTCAGAACTAAACTGCCTCCCGCTACCAGCCCAAAGACATTCTGCCCCActgctgctctctgctctctgctttaTCAAATGCCCAAAAACAGCAAGGCCGTCAAGAGAGAGCTTGACGACGATGTCACAGAGTCTGTCAGGGACCTGCTATCCAATGAGGACACGTGTGATGATTCCTTCAAGAAGAGCTCGCTGATTGTGGGTGGCAGCGGAGGTGCTGGGGAAGGAAAGGACCTTAATGGAGACATGGACGTGGAGGATGGAGGCTCGGACGCAGAGGATGATGCAGCGAGACCAGCCTGGAACAGCAAGCTGCAGTACATCCTGGCCCAGGTGGGCTTCTCTGTAGGCCTGGGCAATGTCTGGAGATTCCCCTACCTGTGTCAGAAGAACGGAGGGGGGGCGTACCTGGTTCCCTACCTCATTCTGCTGATTGTGATTGGCATCCCCCTGTTCTTCCTGGAGCTGTCAGTGGGGCAGCGGATCCGCAGGGGCAGCATCGGGGTGTGGAACTACATCAGTCCTCGCCTGGGGGGCATCGGTTTCGCCAGCTGTGTGGTGTGTTTCTTTGTGGCCCTCTACTACAATGTGATTATAGGGTGGAGTCTCTTCTACTTCTCCCAGTCCTTCCAGCAGCCTCTGCCATGGCACGAGTGTCCCCTGGTCAAGAACAAAACCACTAcgtacGTAGTGCCTGAGTGTGAGAAGAGCTCGGCCACCACGTACTACTGGTACCGTGAGGCTCTGAACATCTCTGACTCCATCTCTGAGAGCGGAGGCCTCAACTGGAGGATGACCATCTGTCTGCTGGCTGCCTGGTCCATGGTCTGCCTCGCCATGATCAAGGGCATCCAGTCCTCTGGGaagGTGATGTACTTCAGCTCGTTGTTCCCTTACGTGGTGCTGATCTGTTTCCTGGTTCGGGCTCTGCTCTTGAAAGGCTCTGTGGACGGCATCCGACACATGTTTACCCCCAAGttGGAGATCATGCTGGAGGCCAAGGTGTGGCGTGAGGCGGCCACGCAGGTCTTCTTCGCCCTGGGCCTGGGCTTCGGAGGCGTCATAGCCTTCTCCAGCTACAACAAGCGGGACAACAACTGCCACTTTGACGCAGTGCTGGTCTCCTTCATCAACTTCTTCACCTCTGTGCTGGCCACCCTGGTGGTGTTTGCTGTGCTCGGCTTCAAGGCCAACATCATGAACGGCAAGTGTGTCGCGCTGAACACTAAGAAGATAGTGGGTTTGCTGGGGAACGAGATCAGCCGTGATCTGATCCCCCACCACATCAACTTCAGCGCCACTGTGAGCGCTGAGGACTACCAAAAGATGACTGTGCTCATCAGAGAGGTGATGGAGAAGGATTACCAGCTTCTGGGTCTGGGCTCCTGTAGTATCGAGGAAGAGCTCAACAAGGCAGTGCAGGGTACAGGCCTGGCCTTCATCGCCTTTACAGAGGCCATGACCCACTTCCCTGCGTCTCCCTTCTGGTCTGTCATGTTCTTCCTGATGCTGGTTAACCTGGGCCTGGGCAGCATGTTCGGAACCATCGAAGGCATCATCACACCCCTGGTGGACACCTTCAAAGTCCGCAAGGAGTTCCTCACAgTGGGCGTCTGTCTGCTGGCCTTTTTCATTGGCCTGCTGTTCGTCCAACGTTCTGGGAACTACTGGGTGGCCATGTTCGATGACTACTCTGCCACACTGCCTCTGCTCATAGTGGTCATCCTGGAGAATGTGGCTGTTGCTTGGGTCTATGGGACTGAcaagtTCTTTGAGGATCTGAAGGACATGCTGGGCTTCACTCCGTTCCGGTTCTACTACTACATGTGGAAGTACGTGACCCCCCTGCTGCTCATCCTGCTGCTGGGCTCCAGTGTGATCCAGCTGGGAATGACCCCACCCAGCTACAGCGCCTGGATCAAGGACCTGGCCAGTGAGAAATCCCTGAGCTACACTCCGTGGGGCCTGGCGGTCTGTATCTCCCTGGTGGTAATGGCCATCATGCCCGTGCCCGTGGTGTTCTTCCTCCGCTACTTCAACATCATCGACGAGAACGCCGGCGTCGTCTCCACCATCTCATACAAGAAGGGCTGCATCATCCAGGAGATAGCCAGGCCCGAGGAGGAGGACGACGCCAGCCTCATCCATGCCAAGTCGCCCTCGCCCATGCCCGGCAACAGCATCTACCGCAAGCAGAACGGAGGGGTTCCCGATTCCACCCCCAACGGCCGATATGGTATTGGTTACTTGATGGCCGACATGCCGGACATGCCCGAGTCAGACTTATAGCATGTTGTTTCTGGTACTCCGCCCTACTGGCTGGCCAACCAATCCCTCTTTTGCGTGCGTTTAGTCGTGGGAATCGTCATCTGCATATTTTTACTCTTATATTTTTACTGTATATTCTTTATAGATATCGTAGCTGCTCCCCTTCATGTTGTCCTTTTCCCGTTTTGCTGTAAAAACAACTAAAAAGGTGTGCACaatgtatactgtacatactatcTCCTTTTGTCTTCCCCACCCAGTCCTTCCTTGGCtcagtcccaaatggaacccctcAGCCCCGTCCTGAAGCTCTTAGTTGACAAGACAGTACAGTATTGGTGTAAGCAATAAGGTGGACACTCCACCAAGCCTGCTATAGTTGCTCAACAAGGGACTTAGGCTAGGGACAAGTGAAGATTAGGTTTGGGgttaattccatttcaattcaggaagtaaactgaaattaaaAATGTTCTCATAGAGGAAGCGATGTGAatttttcagtttacttcctgaatcaccaaattgaaatggaattgaccccaaacctgAGGGATAGATTTGGGACTGGGCCTTTTGTCTGTCTCTGGAAGATGCAGGTTGAGTGTTGTCCCCCCTGGTCCTGCTGTAGAATGCCTGTGTACATTATGACCTCACCTCTGGCCCAGAGTTCTGAGATTAATAGCAGCGCAGCCTCTTTGGGTGACATACGTGTTGGCAATGATGCAATACTGACCACATTTCTTTAGTGTAAGTACAATATAGTGCAAACAGCAAAAGGATGGCATTGAAACTGAACCCTCCCAAccaaaccccccccaaaaatgtgccTAAATAACTTATGATATTTGTTTATAGAATACATGGTGGACGTTGTATATTTAAGGTATTCTGTAAATATaaatattataaatattataaatatatttagCCTATCTGAATAGTTTGGATATCAGAACACCTTGTTTTTTGGAAAGAAGTGCTTCAAATCCTTACAGCTGATTCCATTTTTTGTTTACTGATGTGCTGTCAATCTATGTAGAGGTTTGACCCCTCTTGATAAActtgtaaatatttttttcctccaTGAAATGGCTTCATAACGCAATGTATTTTTTCCCCCTGTTGAAATTAAAGATCAAACTTGGTCCATACTGGGCACTAATGTC

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230225 lncRNA upstream 110937 91618362 ~ 91644022 (+) True G203415
TU230079 lncRNA upstream 341411 91412013 ~ 91413548 (+) True G203281
TU230047 lncRNA upstream 385956 91368559 ~ 91369003 (+) True G203251
TU229990 lncRNA upstream 475000 91279751 ~ 91279959 (+) True G203197
TU229609 lncRNA upstream 500170 91252360 ~ 91254789 (+) True G202844
TU230361 lncRNA downstream 42338 91822319 ~ 91823796 (+) True G203547
TU230385 lncRNA downstream 73232 91853213 ~ 91853577 (+) True G203559
TU230406 lncRNA downstream 81412 91861393 ~ 91861963 (+) True G203579
TU230387 lncRNA downstream 138889 91918870 ~ 91919819 (+) True G203561
TU230461 lncRNA downstream 210891 91990872 ~ 91993704 (+) True G203629
XM_036958969.1 mRNA upstream 163829 91582584 ~ 91591130 (+) True rassf9
XM_021576735.2 mRNA upstream 211194 91366282 ~ 91543765 (+) False mgat4c
XM_021576736.2 mRNA upstream 211194 91382025 ~ 91543765 (+) False mgat4c
XM_021576732.2 mRNA upstream 515222 91235465 ~ 91239737 (+) False LOC110499641
XM_036958904.1 mRNA upstream 541690 91158708 ~ 91213269 (+) False cep290
XM_036959018.1 mRNA downstream 56833 91836814 ~ 91852352 (+) False LOC110499735
XM_021576804.2 mRNA downstream 57300 91837281 ~ 91852059 (+) False LOC110499735
XM_021576812.2 mRNA downstream 57982 91837963 ~ 91852059 (+) False LOC110499735
XM_021576818.2 mRNA downstream 58231 91838212 ~ 91852059 (+) False LOC110499735
XM_021576796.2 mRNA downstream 58727 91838708 ~ 91852059 (+) True LOC110499735
TU230248 other upstream 83060 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 130666 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 215586 91366337 ~ 91539373 (+) True mgat4c
TU229614 other upstream 516968 91237025 ~ 91237991 (+) False LOC110499641
TU228879 other upstream 1037538 90716942 ~ 90717421 (+) True G202185
TU230367 other downstream 46868 91826849 ~ 91847400 (+) True G203551
TU230483 other downstream 241774 92021755 ~ 92024742 (+) True G203646
TU231132 other downstream 377294 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 901365 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 901365 92681346 ~ 92682313 (+) True G204593

Expression Profile