RNA id: XM_021576818.2


Basic Information

Item Value
RNA id XM_021576818.2
length 3110
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110499735
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91836814 ~ 91852352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTGTGGGTCTATTGGACATCATGCTGCTGACTGTGCCGCTTAGGCATATGTTTAGCTGTTTAACTAGGCCTATCTTGAAAAGTTGATTCAGCTAATACTTGTTTAAACGACAATGAATACAATATGCGTAGAATGAGCAATCCCATGGGCGTCATGAGGAAGAAAGTGACGGACGACAGAGAGCGGCGGAGTCTCATCAGAGCGCGGTCTGAATCGAGCACGAACAACCCTGGCGTCACCGTCACCTCTGCCGCCGGCGAACCGGAGCTGGCCACCGACCAGGATGTCACACCGGTATTCGTGTACGTCTTGGCATTTTTTTCTGCCCTGGGTGGCTTCCTTTTTGGCTATGACACCGGGGTGGTCTCTGGGGCTATGCTTCTCCTGAAAAAAGAAATGCATTTGACCGCTCTATGGCAGGAGTTGTTGGTCTCCAGTACTGTGGGTGCAGCGGCGCTCTCTGCCCTGGCTGGCGGGACTCTGAATGGGCTCTTCGGGCGCAGGATCTGCATACTAATGGCCAGCTTCATTTTTACTGCTGGAGGAGTTGTGTTAGGTGCTGCTCCAAACAAGGAGGTTCTTCTTGTCGGAAGGATTACAGTTGGTTTGGGAATAGGGATTGCCTCCATGACAGTTCCTGTTTACCTTGCGGAGGTCTCCCCACCACACCTGAGGGGTCAGCTGGTCACCACTTACACCCTCTTCATCACAGCCGGACAGTTTATTGCCAGTGTTGTGGACGGGGCCTTTACTTACCTGCACCACAACGGCTGGAGgtACATGTTGGGTCTGTCCATTGTTCCTGCGGTGCTCCAGTTCTTTGGTTTCCTATTCCTGCCAGAGAGTCCCCGCTGGCTCCTTCAGAAGGGCCTTACCCAGCAGGCCAGGCAGGTGCTTAGCAGGATCCGCGGGGGTCAGAACATTGAAAAGGAGTATGACAGTATGAGGACCAACATCGAGGATGAGGAGAAGGATGCAGGAGGTGGCCTAGTATTGTGGCATATGCTGACTCACCCTCCCACCCGCAGAGCCCTGACCGTAGGCTGCGGCCTGCAGATGTTCCAACAGCTCTCTGGGATCAACACTGTCATGTACTACAGCGCCACCATCCTACAGATGGCGGGAGTGAGGGACGACAAGCAGGCCATCTGGTTGGCTTCCGCCACCGCTGCCACCAACTTCCTGTTCACCCTGGTGGGGGTGTGGCTTGTGGAAAGAGTCGGACGCAGGAAGCTTACGCTGGGGAGCTtaatggGTACTGCTTTGAGTCTGACGGTCTTGGCTATAGGGTTCCTGTTGTCGGCCCAGCACTCCCCTGCAGTCACTCTCCATCCCACTGACACCTCTCTCAACTCCACCTCCTGCACACTATATGGGTCCTGTCAGCCCTGCATGTTGGATCCTGACTGTGGGTTCTGTTACCGTGAGAATGGTTCCACTGTATACAACTCTTCCTGCATACCTGTCAATCAAACATCGACCGATGAAGCCGCCTGGGGCAGgtgttcCAATCTCAGCCAGGTCAGTGATGGGTCTCTCTGGGCCTATAACTACTGCCCCACTTCCTACTCCTGGATAGTGCTGCTTGGGCTCATCCTCTACCTGGCTTTCTTTGCTCCAGGTATGGGGCCCATGCCGTGGACAGTGAACAGTGAGATCTACCCTCTGTGGGCCAGGAGCACTGGGAACGCCTGTTCAGCCGGAGTCAACTGGATCTGTAACGTCCTGGTGTCACTCACCTTCCTCCACGTCGCTGAGTACCTCACCTACTATGgtgcaTTCTTCCTCTACTCAGGCCTGAGTGTTCTGGGGCTGCTGTTTGTGATGGGCTGTCTGCCAGAGACCCAGGGCCGCAGGCTGGAGGAGATGGAGGCCCTGTTCTCCGGAAACCTCTGCTCCTGCAGTGCGTCTGACAGGGATGGGGACGGATCCAGAAACATCCTGTACAACAGGGTAAAAGGGAGCGACATCCTCTCAGACAATGATGCCTCGGATATGGAGTAGACGTGGCGCGTCAaggaacctctctctctctctctcacaccttcaTGTCCTTTGATTGGTGGATTTACAGGCAGTGGTGTTAAACTCACTTGACTGGGCCTTTAGCATAGAGCAGCTCTCCTAACTGGCTGGTGGACGAGACTTCAACTCTCCTAACTGGCTGGTGGACGAGACTAATTTTCTAGCCCCATGGAGAGAGTTCAGCCAAGTGCACTATGGAGTTAAAGcgtagcatatatatatatatatatatatacatggtaCGCTTTAACTCCatagttaatatatatatatatatatatatatatatatatatatatatatatatattttatcagTATATCAAAGCAGTAAACATCACTGGAATATAACATTACTATTATAAAAGTATAGTAGTGTATTCATTTCCAATGCTTATAAAGTCCCACAAATGTGTAGTAATGCATTTGTTTCTGTCCATGGATTTGGTAATTTCTTTAGCTCCAGTAGTAGTAAGGTGGTACTATCTGGAGATATGTGGCTTCTCAGCCAGGAccaaagttttttatttttttattggcaCACTAGCCTTAATTTGTTTGAATATTTTGATGACATTACTATATTTATTAATCCTTTGCTACAGATTGCACATTGATAAACCTAATGAAATTAACCTTTCCTTTCAGAAGTTTTGGGATTCTTTTTTTGCCTTGCATTCAAATCAATCAAAGTGCACATGATCAAAAGTCCTGTGGTGTTCCACGTGCTTGTTTTGGTGGATTATTATGTCTGCTTGTCTTGGTGGATTATTATGTCTGGGTGGATTATTATGTCTGCTTGTCTTGGTGGATTATTACGTCTGCTTGTCTTGGTGGATTATTATGTCTGCTTGTCTTGGTGGATTATTATGTCTGCTTGTCTTGGTGGATTATTATGTCTGCTTGTTTTGGTGGATTATTATGTCTGCTTGTTTTGGTGGATTATTATGTCTGCTTGTCTTGGTGGATTATTATGTCTGCTTGTTTCATACCTACTGTATTTATACAAATTAAAGCCCACATGCATTTTTTGTAGGTTGGCATGGCAAGTGTTTCCTAGTCAAATTGAATAGTTACTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230361 lncRNA upstream 14416 91822319 ~ 91823796 (+) True G203547
TU230313 lncRNA upstream 69060 91768760 ~ 91769152 (+) True G203503
TU230225 lncRNA upstream 194190 91618362 ~ 91644022 (+) True G203415
TU230079 lncRNA upstream 424664 91412013 ~ 91413548 (+) True G203281
TU230047 lncRNA upstream 469209 91368559 ~ 91369003 (+) True G203251
TU230385 lncRNA downstream 1154 91853213 ~ 91853577 (+) True G203559
TU230406 lncRNA downstream 9334 91861393 ~ 91861963 (+) True G203579
TU230387 lncRNA downstream 66811 91918870 ~ 91919819 (+) True G203561
TU230461 lncRNA downstream 138813 91990872 ~ 91993704 (+) True G203629
TU230515 lncRNA downstream 213201 92065260 ~ 92065481 (+) True G203671
XM_021576786.2 mRNA upstream 58231 91754959 ~ 91779981 (+) True slc6a15
XM_036958969.1 mRNA upstream 247082 91582584 ~ 91591130 (+) True rassf9
XM_021576735.2 mRNA upstream 294447 91366282 ~ 91543765 (+) False mgat4c
XM_021576736.2 mRNA upstream 294447 91382025 ~ 91543765 (+) False mgat4c
XM_021576732.2 mRNA upstream 598475 91235465 ~ 91239737 (+) False LOC110499641
XM_036959025.1 mRNA downstream 1793 91853852 ~ 91933354 (+) False LOC110502363
XM_036959026.1 mRNA downstream 1793 91853852 ~ 91933354 (+) False LOC110502363
XM_036959027.1 mRNA downstream 1793 91853852 ~ 91933354 (+) False LOC110502363
XM_036959031.1 mRNA downstream 1793 91853852 ~ 91933354 (+) False LOC110502363
XM_036959034.1 mRNA downstream 1793 91853852 ~ 91933354 (+) False LOC110502363
TU230248 other upstream 166313 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 213919 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 298839 91366337 ~ 91539373 (+) True mgat4c
TU229614 other upstream 600221 91237025 ~ 91237991 (+) False LOC110499641
TU228879 other upstream 1120791 90716942 ~ 90717421 (+) True G202185
TU230483 other downstream 169696 92021755 ~ 92024742 (+) True G203646
TU231132 other downstream 305216 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 829287 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 829287 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 985365 92837424 ~ 92838127 (+) False LOC110499942

Expression Profile