RNA id: XM_036959025.1


Basic Information

Item Value
RNA id XM_036959025.1
length 5365
RNA type mRNA
GC content 0.55
exon number 35
gene id LOC110502363
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91853852 ~ 91933354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAACACTCAACCTTCACCACAGCGCACCGAGAAGAAGGCGTGGCTTGGTGACGCATTGCGGCTCGAGCAGGATCGGTGTGTGCATTGTGCGGGAGGCGTGTGTCCCTCTCCCAACCAAAGAGCAAGGAGCGAAATCGAGTGGACCACGCAACAGCCTCTCCGCTCCAAACAGAATGTCGTCAAGGAATGTATTCTAGCTGGAAATGCAAGGGAGCACCGACCAGTCGCAGTATTTTATTTAAAATCTATAGACCCATAATAATCTGAAATATGGCTGAAGTGAAGTCGAGGTGAGTTGCGCTGTTGCTCAGACAACTTGCTGTTGAGTGGTGCGCACTCCACTCTCCGCCTCTCGCCAGCCAGCCTGTCGGATGAAAAGAAAACGGATAGATCCCGTTCTTTTTTGTTCTTCTATCAATCGATAGTCATTAGACTGTGGAATCATGTCGATGGGACAGGACGAAAACTCAGTCCGGGTGGCTTTGAGgATTCGTCCTCAACTGGCCCGGGAAAAGATTGAGGGATGTCACATCTGTACGTTTGTGACCCCAGGGGAGCCCCAGGTGATGCTGGGTAAAGACAAGGCCTTTACTTACGACTATGTGTTCGACATGGACTCCTGTCAGGACAGCATCTACGCTAGCTGCACTGAGAAGCTGATCGAGGGCTGCTTCGAAGGATACAACGCCACCATTTTTGCCTATGGCCAGACGGGGTCAGGTAAGACCTACACCATGGGTACAGGGTTTGATGTTAATATCGGGGAAGAGGAGCTGGGCATCATACCCCGGGCGGTCAGCCACCTCTTCAGGGGCATTGAGGAGCGCCAGCAGACCGCTAAAGAGCAGGGACGACCCGTTCCTGAGTTCAAGATCAACGCACAGTTCCTGGAGCTTTACAATGAGGAGGTGCTGGATCTGTTTGACTCTACACGGGACCTGGAAGCTCGGGCGCAGAAATCCCACATAAAAATCCACGAGGACGCTAATGGAGGAATCTACACAGTAGGGGTGACCACACGGACGGTAGCCTCCGAGGCAGAGATGATGCAGTGTCTGAAGCTGGGTGCTCTGTGTCGAACCACCGCCAGCACCCAGATGAACGTCCAGAGCTCCCGCTCTCATGCCATCTTCACCATTCACCTGTGCCAAGTCAGAGTCTGTGCATCCGACAATAAagacaacaacgagacagacaacaacgagacagacaACAACGAGACTGACAACAGGATTGCTAACGGCAACTCAGAGATGGAAGAGTATGAGACACTGACCGCCAAGTTTCACTTTGTGGACCTGGCCGGTTCTGAAAGGCTGAAGAGAACCGGTGCTACAGGAGACCGAGCTAAGGAGGGAATCTCCATCAACTGTGGACTGCTTGCTCTGGGGAATGTAATTAGTGCTTTGGGAGACAGGAGCAAGCGATCCACGCACGTGCCCTACAGAGACTCCAAACTCACCCGGCTCCTACAGGACTCTCTAGGTGGAAACAGCCAAACGATGATGATAGCCTGCATCAGTCCGTCTGACCGGGACTTCATGGAGACTCTGAACGCCTTGAAGTACGCTAACAGAGCCAGGAACATTAAGAACAAGGTGATGGTGAACCAGGACAAGGCCTCCCAGCAGATCTCTGCTCTCAGGACAGAAATCGCCAGGCTACAGATGGAACTGATAGAGTACAGGACCGGTAAGCGTATGGTGGGAGAGGATGGTATGGAGAGCATCAACGACATGGTCCATGAAAACACCATGCTGCAGACTGAGAACAGCAACCTGAGGATCAGGGTCAAAGCCATGCAGGAGACCATTGACGCCCAGAGGGCCAGACTCACACAGTACCTCAgtgaccaggccaaccaggtccTCGCCAGGGCAGgtgAGGGCAGTGAAGAGATTGGGAACATGATCCGGAGCTATATCAAAGAGATAGAGGACCTCAGgGCCAAACTCCTGGAAAGTGAGTCTATGAATGAAAACCTGCGTAAGAACCTGTCCCGTGCCTCCTCACGCCAGTCCTTCTACCCCGGAAccttctcccctgctctcctggCCCCCGAGAAGGAGGCCTCCGACATCATCGAGATGGCCAAGAAAGATCTGGAGAAACTcaagaagaaggagaggaagaagaagaagagGCTCCAGCAGctgctggaagagagagagagggaggagcttgtagaggaggaggatggcagTGTCGTCAAGGAAGAAGTCCCCGACAATGACCAAGACCAAGGGATGGAAAAAGAGCTGACTGAGCGGTCCAATGACGAGCCTGAGATGGATGGGAGTGACCATGaggatgaggaagatgaggaggaggaagaggaggagatggatgTGGAGGAGAGCTCTGATGATTCAGACTCTGAGTCAGATGAGAAAGAGAACTTCCAGGCGGACCTGGCCAACATCACGTGTGAGATCGCCATCAAGCAGAAGCTGATAGATGAACTGGAGAACAGCCAGCGCCGTCTGCACACGCTCAAACAGCAGTACGAACAGAAACTGATGATGCTGCAGAGCAAGATCAGAGACACACAGCTGGAGAGGGACCGGGTGCTGCACAACATGGgcTCAGTGGAGACATGCAGCGACGATAAGGCTAAGAAGATCAAGCAGGAGTATGAGAAGAAGCTGAGCATCATGAACAAGGAACTACAGAAGCTACAGTCAGCGCAGAAGGAACACGCACGCCTGCTCAAGAACCAATCCAAGTACGAGACACAGCTGAAGAAGCTCCAACTGGACGTCACAGAGATGAAGAAGACAAAGGTTCGTCTGATGAAGCAGATGAAGGATCAGCAGGAGAAGAACAGGATGACAGAGTCCAGGAGAAACCGAGAGATCGCCACCCTCAAGAAGGACCAGCGCAAACAGGAGCACCAGCTGAAGCTCCTAGAAGCCCAGAAGAGACAACAGGAGCTCATTTTGCGCAGGAAGACTGAGGAGgTGTCTGCTCTGAGGAGACAGGCCAGGCCTATGTCTGGTAAGGTGACCAGCAGGAAGGTGAGTCTCCCAGAGCCCCTCCAGGACTCCTCCCACCGACCCCCCTCAGGACGCCTGCAGTCCTCTAGCTCCACCTCCACCAACGGAACCAGgtcctACTACAGGCGGTCAACAGGCATATATTCCACCAGAGTGGCCAGGGTGAAGTGGCAGTCTCTGGAGCGTCGTATCTCTGATGTCATCATGCAGAGGATGACCATATCCAACATGGAGTCTGAAATGAACCGCCTGCTCAAGCAACGTGAGGAGCTGACCAAGCGGAGGGAGAAGGTGACCAGAAAGAGGGACAGGCTGGCGGGGGAGGGGCCTGAGGCTGAAAAGGCGGTGCTTCCCCTCAACGAGGAAGTGGACGCCGTGGTTGCCAACATCGACTACATCAACGACAGCATCGCTGACTGCCAGGCCAACATTATGCAGATGGAGGAAGCCAAGGAGGAGGTTGACACGGTGGATGTTTCCGCAGTCATCAGCTCCTGTACCCTAACAGAAGCCCGCTTCCTGCTGGACCACTTCATGTCTATGGCCATCAACAGAGGTCTGCAGGCGGCTCAGAGGGAGTCCCAGGTGAAGGTGATGGAGGGCAGGCTGAAGCAGACTGAGATCACCAGCGCCACTCAGAACCAGCTGCTGTTCCACATGCTGAAGGAGAAGGCAGAGTTTAACCCCGAACTGGACGCCCTGCTGGGGAACGCTCTGCAAGAGCTAGGTAACATGCCATTGGAGAACGGGGATGACAGCAGCAGTGACGAATCTGCCCAGAGTCCTGCAACAGAGGGACACTCCCTGGCATCAGATCTAATGAAACTCTGTGGAGAGACCAAAACAAGGAGCAAGGCTCGTAGAAGAACCACCACTCAGATGGAGTTGCTCTACGCCAATAGTGACGCTGCCCCTGACATGCCCAGCGGAGAtttctcctccccctgtctcccatTGGCTGAAACACCAGAAGAGGGCAGAGATCCTGAGACCCCCATTGGCTCATCAGTCAGGGACAGAGACTTTATGGCTCATTCTCCTGGCTTGGCCTCTAAGATGGGCAGCATTTCCGGCTCCATGGCTGCCTCCTCCTCGGGGGCGGAAAAGAGAGTTCCAGAGCCCTCGCCGCTCTCTCGCAGGAAGACCTATGACAGGGCACAAGCGGCGGCTAAGGTCAAGGAGATCAAACAAGGGGTAATCAACCCAGTGCCCTCTTCAAAGGGCAGTCGGTCAGCAACACTACAGTGTGTCCATGTGGCTGAGGGTCACACTAAAGCGGTGTTGTGTGTCGACTCTACTGATGACCTCCTCTTCACCGGCTCCAAAGACCGTACGTGTAAGGTGTGGAACCTGGTGACGGGTCAGGAGATCATGTCCCTGGCGGGTCACCACAACAATGTGGTGTCAGTCCGCTACAGCTCCAGCCTGGTCTTCACCGTCTCCACCTCCTACATCAAGGTCTGGGACATCCGAGACTCAGCCAAGTGCATCCGCACCCTCACGTCTTCTGGTCAGGTGACTCCTGGCGATGCCTGCGCGTCCAGCACCAACCGGACTGTCACCATCCCGGCAGGAGAGAACCAGATCAACCAGATTGCCCTCAACCCCAGCGGCTCTGTCCTGTACGCCGCCGCCGGCAACTCTGTCAGAGTCTGGGACGTAGGAAGATTTGTATCTACAGGGAAGCTGACTGGTCACCTGGGTCCAGTCATGTGTCTGACTGTGGACCAGAGCGGGAACGGTCAGGATCTGGTCATCAGCGGCTCCAAGGACCATTACATCAAGATGTTTGACGTGGCAGAGGGGGCCCTGGGTGCTATTGGCCCCACACACAACTTTGAGCCTCCCCACTACGATGGAATCGAGTCCCTGGTGGTGCAGGGGGACGTTCTCTTCAGTGGCTCCAGGGACAACGGCATTAAGAAGTGGGACCTAGCCCGCAAAGACCTACTGCAGCTAGTGCCCAATGCCCACCGTGACTGGGTGTGTGCCCTGGGTGTGGTGCCTGGCTCTCCGGCCCTGCTGAGCGGCTGTAGAGGAGGGGTGCTCAAGCtttggcacacagacacactggggGCCCTGGGGGAACTCAAGGGCCACGAGAGCCCCATCAACGGCATCTCCACCAACAGCAGCCACCTCTTCACAGCATCTGATGATCGAACAGTGAAGATCTGGCGTGCCCGGGGCGGACTCGACAGCACCTTAGAGACAACGGCGGACACCACTGACGAGGTGGCCAATAACTGAACATGGCTGTGACCTCCCGTCGTGACCCTTAACCTTGGACGCTGCTGACTAGCACTTTTACCTCTGAGCTTTCACCTTGGAAAccatggaacccccccccccccccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230385 lncRNA upstream 275 91853213 ~ 91853577 (+) True G203559
TU230361 lncRNA upstream 30056 91822319 ~ 91823796 (+) True G203547
TU230313 lncRNA upstream 84700 91768760 ~ 91769152 (+) True G203503
TU230225 lncRNA upstream 209830 91618362 ~ 91644022 (+) True G203415
TU230079 lncRNA upstream 440304 91412013 ~ 91413548 (+) True G203281
TU230461 lncRNA downstream 57518 91990872 ~ 91993704 (+) True G203629
TU230515 lncRNA downstream 131906 92065260 ~ 92065481 (+) True G203671
TU230518 lncRNA downstream 141274 92074628 ~ 92074860 (+) True G203674
TU230523 lncRNA downstream 145368 92078722 ~ 92078933 (+) True G203679
TU230542 lncRNA downstream 166003 92099357 ~ 92099781 (+) False G203697
XM_036959018.1 mRNA upstream 1500 91836814 ~ 91852352 (+) False LOC110499735
XM_021576804.2 mRNA upstream 1793 91837281 ~ 91852059 (+) False LOC110499735
XM_021576812.2 mRNA upstream 1793 91837963 ~ 91852059 (+) False LOC110499735
XM_021576818.2 mRNA upstream 1793 91838212 ~ 91852059 (+) False LOC110499735
XM_021576796.2 mRNA upstream 1793 91838708 ~ 91852059 (+) True LOC110499735
XM_036959047.1 mRNA downstream 3798 91937152 ~ 92008067 (+) True LOC110502371
XM_021576837.2 mRNA downstream 95080 92028434 ~ 92049230 (+) True smc1b
LOC110502379 mRNA downstream 124208 92057562 ~ 92063708 (+) True LOC110502379
XM_021576854.2 mRNA downstream 132244 92065598 ~ 92072317 (+) True borcs5
XM_021576866.2 mRNA downstream 152960 92086314 ~ 92116411 (+) False LOC110499798
TU230367 other upstream 6452 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 181953 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 229559 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 314479 91366337 ~ 91539373 (+) True mgat4c
TU229614 other upstream 615861 91237025 ~ 91237991 (+) False LOC110499641
TU230483 other downstream 88401 92021755 ~ 92024742 (+) True G203646
TU231132 other downstream 223921 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 747992 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 747992 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 904070 92837424 ~ 92838127 (+) False LOC110499942

Expression Profile