RNA id: TU130396


Basic Information

Item Value
RNA id TU130396
length 568
lncRNA type intronic
GC content 0.48
exon number 3
gene id G113848
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11666856 ~ 11668443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagtactgtcaacactgttattattcaggactgtcaacgCTGTTATTAttcagtactgtcaacactgtttttattcagtactgtcaacactgttattattcagtactgtcaacactgtttttattcagtactgtcaacactgttattattcaggactgtcaacgCTGTTATTAttcagtactgtcaacactgtttttattcagtactgtcaacactgtttttattcagtcctgtcaacactgtttttattcagtcctgtcaacactgtttttattcagtactgtcaacactgtttttattcagtactgtcaacactgtttttattcagtactgtcaacactgtttttagtcagtactgtcaacactgtttttattcagtactgtcaacactgtttttattcagtactgtcaacactgtttttattcagtactgtcaacactgttatttttcagtactgtcaacactgttatTATTCAGTCCTGTCATCACTGTTTTTAgtcagtactgtcaacactgtttttattcagtactgtcaacactgtttttattcagtactgtcaacactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130385 lncRNA downstream 19957 11646605 ~ 11646899 (-) True G113840
TU130373 lncRNA downstream 42314 11624078 ~ 11624542 (-) True G113829
TU130370 lncRNA downstream 46517 11619971 ~ 11620339 (-) True G113826
TU130369 lncRNA downstream 47339 11619220 ~ 11619517 (-) True G113825
TU130360 lncRNA downstream 91256 11573664 ~ 11575600 (-) True G113818
TU130402 lncRNA upstream 6985 11675428 ~ 11677051 (-) False G113853
TU130403 lncRNA upstream 7333 11675776 ~ 11677051 (-) True G113853
TU130404 lncRNA upstream 8898 11677341 ~ 11677774 (-) True G113854
TU130408 lncRNA upstream 19632 11688075 ~ 11688555 (-) True G113858
TU130421 lncRNA upstream 61110 11729553 ~ 11730005 (-) True G113870
XR_005035106.1 mRNA downstream 80279 11585559 ~ 11586577 (-) True LOC118937710
XR_005035107.1 mRNA downstream 81401 11584208 ~ 11585455 (-) True LOC118937712
XM_036938010.1 mRNA downstream 263994 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 405347 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 405347 11248037 ~ 11261509 (-) False prelid3a
XR_005035110.1 mRNA upstream 290836 11959279 ~ 11960863 (-) True LOC118937716
XR_005035108.1 mRNA upstream 293111 11961554 ~ 11962594 (-) True LOC118937715
XR_005035074.1 mRNA upstream 417121 12085564 ~ 12088996 (-) False LOC118937706
XR_005035075.1 mRNA upstream 417121 12085564 ~ 12088996 (-) False LOC118937706
XR_005035076.1 mRNA upstream 417121 12085564 ~ 12088996 (-) False LOC118937706
TU130213 other downstream 8188 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 314115 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 314115 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 341244 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 354198 11310843 ~ 11312658 (-) True G113712
TU131242 other upstream 915584 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 942226 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1039384 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1066871 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 1423649 13092092 ~ 13093765 (-) True LOC110507534

Expression Profile