RNA id: XR_005035107.1


Basic Information

Item Value
RNA id XR_005035107.1
length 1069
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118937712
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11584208 ~ 11585455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggttagtagataggtgaggtaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtgggtTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTAAAGGACCTACCTGGTGTGGGTTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtggttGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTAAAGGACCTACCTGGTGTGGGTTGATTCAGACCTTTAGataggtgaggtaaaggacctgcctggtgtggttgattcagacctttagGTTAGTAGATAGGTGAGGTaaaggacctgcctggtgtgggtTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTAAAGGACTTGCCTGGTGTGGGTTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtgggtTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTAAAGGACCTGCCTCGTGTGGTTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtggttGATTCAGACCTTTAGGTTAGTAGATAGGGGAGGTAAAGGACCTTCCTGGTGGGGTTGATTCAGACCTTTAGGTTAGTAGATAGGTGAGGTaaaggacctgcctggtgtgggttgattcagacctttaggttagtagataggtgaggtaaaggacctgcctggtgtgggttgattcagacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130360 lncRNA downstream 8608 11573664 ~ 11575600 (-) True G113818
TU130358 lncRNA downstream 18379 11565388 ~ 11565829 (-) True G113816
TU130347 lncRNA downstream 37778 11546030 ~ 11546430 (-) False LOC110513475
TU130344 lncRNA downstream 44476 11536833 ~ 11539732 (-) True G113806
TU130338 lncRNA downstream 66555 11517109 ~ 11517653 (-) True G113800
TU130369 lncRNA upstream 33765 11619220 ~ 11619517 (-) True G113825
TU130370 lncRNA upstream 34516 11619971 ~ 11620339 (-) True G113826
TU130373 lncRNA upstream 38623 11624078 ~ 11624542 (-) True G113829
TU130385 lncRNA upstream 61150 11646605 ~ 11646899 (-) True G113840
TU130396 lncRNA upstream 81401 11666856 ~ 11668443 (-) False G113848
XM_036938010.1 mRNA downstream 181346 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 322699 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 322699 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 415570 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 524735 11058984 ~ 11059473 (-) False LOC118937688
XR_005035106.1 mRNA upstream 104 11585559 ~ 11586577 (-) True LOC118937710
XR_005035110.1 mRNA upstream 373824 11959279 ~ 11960863 (-) True LOC118937716
XR_005035108.1 mRNA upstream 376099 11961554 ~ 11962594 (-) True LOC118937715
XR_005035074.1 mRNA upstream 500109 12085564 ~ 12088996 (-) False LOC118937706
XR_005035075.1 mRNA upstream 500109 12085564 ~ 12088996 (-) False LOC118937706
TU130157 other downstream 231467 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 231467 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 258596 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 271550 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 366054 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 41080 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 998572 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1025214 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1122372 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1149859 12735314 ~ 12739157 (-) True G114442

Expression Profile