RNA id: TU131244


Basic Information

Item Value
RNA id TU131244
length 1302
lncRNA type antisense_over
GC content 0.61
exon number 2
gene id G114391
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12588120 ~ 12591840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGACTGAAACACAGCCCAGTGGTGCGATGAGGGAGGCCGGGGCGAAGCCGTAGGCTGCGAAGTTCCCCAGCTCCCCTAGTCCCATCAGAACCACGCCACTCCACCACAGCACTGAGGTGTAGTAGGGCCCGGAGTCGCCGAGCTGGGACTGGCGCATGTGGGCGTATTTCTGACAGCGAGAGGACAGAGGGCACAGAGTCAAAAAGAACAGCACTTCTTTCACTGGTTAAGAGGAGCATTGGGAAAATACACAAATAATACAGTAGCTAACATAACATCAGTAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCATTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTATACGGTCTCCTAAAACACTAGTGTTGTTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTATAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTATAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTTAGTGTTGTATCTCATAGTACTGCACACGGCCTCCTAAAACACTAGTGTTGTTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTATAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTATACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131241 lncRNA downstream 9756 12577859 ~ 12578364 (-) True G114389
TU131211 lncRNA downstream 112351 12474320 ~ 12475769 (-) True G114364
TU131201 lncRNA downstream 121720 12464565 ~ 12466400 (-) True G114362
TU131200 lncRNA downstream 123962 12462746 ~ 12464158 (-) True G114361
TU131198 lncRNA downstream 132083 12455762 ~ 12456037 (-) True G114359
TU131255 lncRNA upstream 13131 12604971 ~ 12608944 (-) True G114399
TU131257 lncRNA upstream 26681 12618521 ~ 12619052 (-) True G114401
TU131256 lncRNA upstream 31449 12623289 ~ 12624052 (-) True G114400
TU131260 lncRNA upstream 33859 12625699 ~ 12626684 (-) True G114404
TU131261 lncRNA upstream 42909 12634749 ~ 12634983 (-) True G114405
XR_005035115.1 mRNA downstream 34601 12549299 ~ 12553519 (-) False LOC118937718
XM_036938124.1 mRNA downstream 34601 12549300 ~ 12553519 (-) True LOC118937718
XM_036961628.1 mRNA downstream 142963 12435469 ~ 12445157 (-) True LOC118944056
XM_036938107.1 mRNA downstream 283170 12299928 ~ 12304950 (-) True osr2
XM_036938110.1 mRNA downstream 283171 12299928 ~ 12304949 (-) False osr2
XR_005039515.1 mRNA upstream 25666 12617506 ~ 12617694 (-) True LOC118944197
XM_036938156.1 mRNA upstream 47862 12639702 ~ 12673826 (-) False pop1
XM_036938159.1 mRNA upstream 47862 12639702 ~ 12673874 (-) False pop1
XM_036938190.1 mRNA upstream 91218 12683058 ~ 12683775 (-) True LOC118937724
XM_036938172.1 mRNA upstream 91253 12683093 ~ 12715610 (-) False LOC118937723
TU131242 other downstream 2980 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 929452 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 1235379 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 1235379 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 1262508 11323041 ~ 11325612 (-) True G113720
TU131258 other upstream 18829 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 115987 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 143474 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 500252 13092092 ~ 13093765 (-) True LOC110507534
TU131755 other upstream 703993 13295833 ~ 13323323 (-) True LOC110513400

Expression Profile