Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028134 |
| length | 917 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.44 |
| exon number | 5 |
| gene id | XLOC_014118 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 29854223 ~ 29860334 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-141219-41 | Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to several human genes including THAP6 (THAP domain containing 6). |
| ensembl_id | ENSDART00000171224 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029954 | lncRNA | upstream | 38517 | 29808713 ~ 29815732 (+) | False | XLOC_014117 |
| TCONS_00028132 | lncRNA | upstream | 38517 | 29814782 ~ 29815732 (+) | True | XLOC_014117 |
| TCONS_00028130 | lncRNA | upstream | 39411 | 29808713 ~ 29814838 (+) | False | XLOC_014117 |
| TCONS_00029952 | lncRNA | upstream | 102506 | 29746138 ~ 29751743 (+) | False | XLOC_014115 |
| TCONS_00029953 | lncRNA | upstream | 102506 | 29750095 ~ 29751743 (+) | True | XLOC_014115 |
| TCONS_00028144 | lncRNA | downstream | 727660 | 30587866 ~ 30589951 (+) | False | XLOC_014124 |
| TCONS_00028143 | lncRNA | downstream | 727660 | 30587866 ~ 30589951 (+) | True | XLOC_014124 |
| TCONS_00029723 | lncRNA | downstream | 864790 | 30724996 ~ 30725703 (+) | True | XLOC_014127 |
| TCONS_00029955 | lncRNA | downstream | 939846 | 30800052 ~ 30801988 (+) | True | XLOC_014128 |
| TCONS_00029956 | lncRNA | downstream | 972084 | 30832290 ~ 30836205 (+) | True | XLOC_014129 |
| TCONS_00028128 | mRNA | upstream | 32648 | 29808471 ~ 29821601 (+) | False | XLOC_014117 |
| TCONS_00028129 | mRNA | upstream | 35601 | 29808699 ~ 29818648 (+) | False | XLOC_014117 |
| TCONS_00028131 | mRNA | upstream | 38883 | 29808722 ~ 29815366 (+) | False | XLOC_014117 |
| TCONS_00028127 | mRNA | upstream | 53437 | 29798106 ~ 29800812 (+) | True | XLOC_014116 |
| TCONS_00028126 | mRNA | upstream | 54044 | 29798064 ~ 29800205 (+) | False | XLOC_014116 |
| TCONS_00028137 | mRNA | downstream | 527793 | 30387999 ~ 30399178 (+) | False | XLOC_014119 |
| TCONS_00028138 | mRNA | downstream | 527980 | 30388186 ~ 30399876 (+) | True | XLOC_014119 |
| TCONS_00028139 | mRNA | downstream | 562911 | 30423117 ~ 30428901 (+) | True | XLOC_014120 |
| TCONS_00028140 | mRNA | downstream | 589919 | 30450125 ~ 30468234 (+) | True | XLOC_014121 |
| TCONS_00028141 | mRNA | downstream | 634903 | 30495109 ~ 30516680 (+) | True | XLOC_014122 |
| TCONS_00028123 | other | upstream | 533366 | 29303847 ~ 29320883 (+) | False | XLOC_014112 |
| TCONS_00028122 | other | upstream | 650992 | 29203142 ~ 29203257 (+) | True | XLOC_014111 |
| TCONS_00028118 | other | upstream | 1520085 | 28331227 ~ 28334164 (+) | True | XLOC_014108 |
| TCONS_00028117 | other | upstream | 1523152 | 28321679 ~ 28331097 (+) | False | XLOC_014108 |
| TCONS_00028114 | other | upstream | 1538296 | 28291376 ~ 28315953 (+) | False | XLOC_014108 |
| TCONS_00028142 | other | downstream | 658249 | 30518455 ~ 30518573 (+) | True | XLOC_014123 |
| TCONS_00028145 | other | downstream | 770737 | 30630943 ~ 30631060 (+) | True | XLOC_014125 |
| TCONS_00028149 | other | downstream | 1019582 | 30879788 ~ 30882456 (+) | True | XLOC_014131 |
| TCONS_00028153 | other | downstream | 1024778 | 30884984 ~ 30887251 (+) | False | XLOC_014132 |
| TCONS_00028157 | other | downstream | 1025106 | 30885312 ~ 30891010 (+) | True | XLOC_014132 |
