RNA id: TCONS_00028140


Basic Information

Item Value
RNA id TCONS_00028140
length 1924
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_014121
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30450125 ~ 30468234 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGCAGTATCACTTGTTGGCCACTGGATGTCCCTCTAACAGGCGGATTCTGCTTCTAGAAGGTGTCGTGCGCACGCGCTCTGACGCAGGCTGGCGCTGGGCAAGGACATAAGGAGAGTGACATTTGTATAACGTTAACAAGAAACTCGCATTCTTTCCTAAATCCCACATAAATTTTCGTCAGCCACATTTGGATACTCCCACACATCTATGCACAGCGCGTTGACGCTCAACAGCATCTCGTATGATTCACTGAGGACAGGTTCTGGAGGACTGAATTCACACTGTGAATGAACGAATAATTAGAAGCAGTGGTGGATGGGAGAGCGCACCTTTCTTGCTGTTGATGTCATCTTTCTAAGACTCGTCGAGGTGTCCTCAGCACCCTGACTTGAATGGCTGTGTGCAGAGGGGGCGTCTCTCTTTGGGTGGGGTGTGTCAGGAACCATGGCGGAAGGCAACCAATGACAAAACAGTGCTGGAATTTATGTCAGACAACCGAGTTTCACTTAAATGACAACTGTAGGACCCTGAGCAGTGCATCATGGGCCTTGGCTCCTCCAAATAGTCTACGTTACCTGTCCATTAAACAGCCAGCCCTGTCCCATCCCTTCCACCATGCATGTCAGCCCAACCGATCGGCCAACCTCGAAGAAGAGGAATGGGAAGAGACCGTCAGCTTGCAAGTCCTGTTCAAACCTGGAAGAAGCCATGAGCAGCACATGGTGGTGGAAGAGCCCTTTATTGGGCCTGCCAAATTAAGCGAGCTCCTTGCTCTGGGACCCAACAGACCTTTTGACTTGCTTTTTCCTTTAACCACTGTTGATGGAAGCAGGGAGGATGATATTAGCATTATTGGAAATGCAGGGACTGCGGAAAAGGAGCTGATGGAGTCTCCTTCAAGCTCCTTCAGGAGTCTCTTTGAGACTGAGGGATGTCCTGCGCCGTTTATGCTGGGATCTCGCTTCTATTGTTTTCACTCCTCTGTTTTGGAGATCGGGAACCAACCAGGAAAGGGACAAGATGAGTGGAGCTTCTATCCAGCCCTCCATGTCACACATTGCAGCCGTGATGAGACTGGGAGAGCGGACAAGAGCTCCAGCCAGAGAGACATGGAGAATGAGGAGAAACTGGCCCTGATGCATGAGAAGCTGAGGGTGGAGCTGCCCAGATTCTTTAGGAAAAATCATGACTACAGCATATACTCTGAAGATGTTGAGTTCATCAATGGTCTTCTGAACACCAAGACAAGGGGTCGTGTGGTGTACCAGCTGACTCTAACTCTTTGGAAATTGATGTGTCTCTTCTACTATGCCGATGCTCAGCTGGAAGTGCTGAAGCTGACCAAGCATCCAGAAGACGGCTCCATCAAAGCTCGCTGGAGAGTCAAAGGCCTGCCCTTCCACTCCATTCTGGTGTTTTTCTATAAGAAAGACAAGAATCACCTCTACAGAACATATGATGCATTCTCCACCTTCTACATTGGAGCTGATGGACGAATACATTGCCATAAAGTTGAAAAGGTAATGGAGGCTCGTCCACCTCTGCTGCCCAAAGTGGCCTCAATGCTTGGCGGGGCTCTGGTGGCCCTGGGCATTCAGGAACACCGTCCCGCCCTCAACCTGCTCCCACTCCTGCTGTCCTCCCTCCGACAGGCCCGAGCCTGAGCCGAGAACCTGCGCTGATTGGTCACACCATTAAAAAGACTGTAAAAGATGTGGCGCTCTATTATGTGGGTTGAGTAAATAAGATGTTGATAACCAATTCcttgggggaaaaaaagattgCAGAAGTAAGCCGGAACGAGTTAAAACTGATCTCACTTGAAACAATCTTCTAATTTCCATGATATGAATATCACCAACCCGATATCATATTTGGTTTGGATTGTGATGGGAGCCTGTATTTAAGATTAAACTCCACT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5518 Is expressed in female organism. Orthologous to human C6orf136 (chromosome 6 open reading frame 136).

Ensembl:

ensembl_id ENSDART00000073704

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029954 lncRNA upstream 634393 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA upstream 634393 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028130 lncRNA upstream 635287 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029952 lncRNA upstream 698382 29746138 ~ 29751743 (+) False XLOC_014115
TCONS_00028144 lncRNA downstream 119632 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00028143 lncRNA downstream 119632 30587866 ~ 30589951 (+) True XLOC_014124
TCONS_00029723 lncRNA downstream 256762 30724996 ~ 30725703 (+) True XLOC_014127
TCONS_00029955 lncRNA downstream 331818 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029956 lncRNA downstream 364056 30832290 ~ 30836205 (+) True XLOC_014129
TCONS_00028139 mRNA upstream 21224 30423117 ~ 30428901 (+) True XLOC_014120
TCONS_00028138 mRNA upstream 50249 30388186 ~ 30399876 (+) True XLOC_014119
TCONS_00028137 mRNA upstream 50947 30387999 ~ 30399178 (+) False XLOC_014119
TCONS_00028133 mRNA upstream 589907 29854223 ~ 29860218 (+) False XLOC_014118
TCONS_00028135 mRNA upstream 593089 29854282 ~ 29857036 (+) False XLOC_014118
TCONS_00028141 mRNA downstream 26875 30495109 ~ 30516680 (+) True XLOC_014122
TCONS_00028146 mRNA downstream 165219 30633453 ~ 30683678 (+) False XLOC_014126
TCONS_00028147 mRNA downstream 194295 30662529 ~ 30684874 (+) True XLOC_014126
TCONS_00028148 mRNA downstream 399611 30867845 ~ 30884054 (+) False XLOC_014131
TCONS_00028150 mRNA downstream 416472 30884706 ~ 30895272 (+) False XLOC_014132
TCONS_00028136 other upstream 589791 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028134 other upstream 589919 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028123 other upstream 1129242 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028122 other upstream 1246868 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028118 other upstream 2115961 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028142 other downstream 50221 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028145 other downstream 162709 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 411554 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028153 other downstream 416750 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028157 other downstream 417078 30885312 ~ 30891010 (+) True XLOC_014132

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_08353876_08358232.mRNA True 1667 mRNA 0.48 5 CI01000054 8353376 ~ 8358232 (-)