RNA id: TCONS_00029952


Basic Information

Item Value
RNA id TCONS_00029952
length 1078
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_014115
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29746138 ~ 29751743 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTTGTCTACATTTGATTGCTCCCAGGGGCAGTAATTATGGGCGTCAGGGGGTTCCTGATAGGAAAGTGTTGCTGCCGTCCTCGTCCTGCAGTGGTATCAGTGGCGGTCTGTGACAGAGGGGTAAGTGGTGTCTTCACTTTCAGGACTTGACCCTGTGCTGAGTAGCACTTTGATGGGAACCAATTACCCCCAGACAGCACCTGTCAACACACGGAGAGAGCGGACACAGATGAGGCAGATATTCACCTTTACACCCCACACACAACGGGAGCTGGCCTCCTGCTGCCTCGTGCTCTTTACTTTCAAGGGTCACACAGTGCACATCAAAAGAACAACATCTACTTCATTTAACTAATGTAGGAGCCCAAAGAAGCCCTTTACATGATGGATGACAGGAAGCTATTTCACCTTTTCTTTCTCTCATTCTACCTATTTCTCTGTCTATTTAACTGTACATATGCCTAAATATCTGTTCTAATATCTGACAGTGGTGGATTTTCTTTAGGTATTTTTGCTTCACTACTGTGAATATCTTTACTTTACaggagtatttttattttaaggaatCTTTTACTTCACTTCATTCCAAAACAAAATACAGTGGTCTCTTGTTATTCacggagttacgttctaaaaataacctttattttagctttattttctataattattatagatgttttaagactCTAAAACCCCTCAATACACagtttatacacttttctcagacaggcattaacattttcacacttttctctcttcttTAAACTCTCAAAGTCCAAACCTTCGTATAAAAAATgtgtccagtattatagaataaaagcaaagatcaaaaccatttgatcttcatttactgtatttattccaTAATGGCGCCCTACAGCCGTGTAACTTCTACCtttctttagcatgtccagaagtccaactGTTTGGtgtgatggttagcatcttcctctgcctgtTGGGTGCTACCGCAGGTGCCTCTGACGGTGCAGAATGTTTTGTCGACATTGTTGGtcaaaaacttgcaaacatacagtacagcactttagagtcacactgctagcaatcaaaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029949 lncRNA upstream 139135 29459117 ~ 29607003 (+) False XLOC_014114
TCONS_00029951 lncRNA upstream 139135 29459174 ~ 29607003 (+) True XLOC_014114
TCONS_00029948 lncRNA upstream 144684 29459117 ~ 29601454 (+) False XLOC_014114
TCONS_00029950 lncRNA upstream 144684 29459121 ~ 29601454 (+) False XLOC_014114
TCONS_00029947 lncRNA upstream 159399 29459117 ~ 29586739 (+) False XLOC_014114
TCONS_00028130 lncRNA downstream 56970 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029954 lncRNA downstream 56970 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA downstream 63039 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028144 lncRNA downstream 836123 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00028143 lncRNA downstream 836123 30587866 ~ 30589951 (+) True XLOC_014124
TCONS_00028125 mRNA upstream 382359 29337789 ~ 29363779 (+) True XLOC_014113
TCONS_00028124 mRNA upstream 412271 29303847 ~ 29333867 (+) True XLOC_014112
TCONS_00028116 mRNA upstream 1411983 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028113 mRNA upstream 1412298 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028126 mRNA downstream 46321 29798064 ~ 29800205 (+) False XLOC_014116
TCONS_00028127 mRNA downstream 46363 29798106 ~ 29800812 (+) True XLOC_014116
TCONS_00028128 mRNA downstream 56728 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028129 mRNA downstream 56956 29808699 ~ 29818648 (+) False XLOC_014117
TCONS_00028131 mRNA downstream 56979 29808722 ~ 29815366 (+) False XLOC_014117
TCONS_00028123 other upstream 425255 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028122 other upstream 542881 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028118 other upstream 1411974 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028117 other upstream 1415041 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028114 other upstream 1430185 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028134 other downstream 102506 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028136 other downstream 107293 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028142 other downstream 766712 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028145 other downstream 879200 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 1128045 30879788 ~ 30882456 (+) True XLOC_014131

Expression Profile

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