RNA id: TCONS_00028116


Basic Information

Item Value
RNA id TCONS_00028116
length 2050
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_014108
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28291062 ~ 28334164 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGTGTAAGACCAGGAAGTTGTGTAGTATATAAACGGAACACTTTGTGGAAGCATTTTCTCGTggactttatatatttttctttttaaaggtacatattacTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACGGCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTAGAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCAGAAACTCAAGATAGCTGTGATGACTGTGACGCTTTTCCCTGTTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTGGCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAATGCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATCTGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGGAGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTGCCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTTCCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTCTATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGGGGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCCGCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGATCAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATCATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTCTCATCGCATTTAAGCCTGGTGCATTCATCCCTGGCGTTCCTGTCCAGCCTGTCGTGTTGCGGTATCCTAATGAGTTGGATACAATCTCATGGACGTGGCAAGGGCCTGGAGCGTTTAAGATTTTGTGGCTTACATTGTGTCAGCTACATAACTTCGTTGAGATAGAGTATCTTCCTACATACACTCCGTCAGAAGAGGAGAAGAAAGATCCAGCCCTGTTTGCCAGCAATGTGAGACGCATCATGGCCAAGGCACTTGGGTTGCCCATTATCGATTACTCTTTTGAGGACTGCCAGCTTGCCATGGCCAAAGGCCCTTTGCGTTTGCCCAAACACACCTGCTTGCTAGAATTCGCCAGACTGGTGCGACTTTTGGGcCTGAAGACAAAAGTCACAGATGAAGTCTTGCAAGAAGAAGCTTGCAGTGCCCGTCAGCTGTGTGGAAGACGACTGGACATGGAGGGCTTTGCTCAGTATCTCCACCAACCCATGACAGAAGCAGTCCAGGATATCTTCTCACTATTTGAAGAGCATGGGATGATGGATGTGAGAGAATACGTCATCGCTCTGTCAGTGGTTTGTAGACCTTTCAGATATCTGGACACCGTTAAACTGGCCTTCAGGaTGTTTGAAGCACAGGAGGACGGAGCTATTGTTGAAGACGAACTGACCGTCATTCTAAAAACTGCTCTGGGAGTTGGAGATCTTGCTGTTTCTGAACTCTTCAGGGCCATAGATAGCCAAGACAAGGGAAAGATCACATTTGATGAATTGTGCAGCTTCATGGAGAAATGCCCTGATTTGGTGGAGCAGTATCACTGTCTCTGTGAGTCAATCTCTCAGCACTCCAGAGAATCCACATCTTCAAGTAACGGCTTCTGTGCTGACTTCAGCCCCCGAAATCACAGCAAGAAACAGGACTAAACATGGCTTTACCATCACAGCCTGTCACCCTCAGTGTGTGACGCTGTTTTCCTGTGTGCACCAAGAGAGGTGATGACAGACCACATCTCAAGTTGAATCTGAATTTGCATCTGGGTACATTACCCTAGGGATTTTCCCAGAGTTTTTGTTCAAAATccttcaataatttattttttatgcccTCAAGGAACTTATCTTCAAGGCGCTTCGTTTTTCTGACAGATCTTAAGAATGGAAACGAAACTGACTTTATTTTAATGCCTTATGTTCTTTTTTTGACAGAGagattttcacagtttttctaTATAAAGCGTTGCTTGCTTTAAAAGATTGCAATTTTTAATATgcgcaaaataaataaataaaaaaaccacgccaacaaca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005811 lipid droplet cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0047159 1-alkenylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0047192 1-alkylglycerophosphocholine O-acetyltransferase activity molecular_function
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-915 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

Ensembl:

ensembl_id ENSDART00000103855

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029919 lncRNA upstream 95998 28115805 ~ 28195442 (+) False XLOC_014105
TCONS_00029918 lncRNA upstream 103757 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00029920 lncRNA upstream 103757 28115901 ~ 28187683 (+) False XLOC_014105
TCONS_00029921 lncRNA upstream 172831 28115922 ~ 28118609 (+) False XLOC_014105
TCONS_00029917 lncRNA upstream 314957 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00028119 lncRNA downstream 454813 28788968 ~ 28824390 (+) False XLOC_014109
TCONS_00029923 lncRNA downstream 456555 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029925 lncRNA downstream 456555 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029927 lncRNA downstream 456555 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029926 lncRNA downstream 456555 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00028112 mRNA upstream 1227 28284120 ~ 28290213 (+) True XLOC_014107
TCONS_00028107 mRNA upstream 28543 28115801 ~ 28262897 (+) False XLOC_014105
TCONS_00028124 mRNA downstream 969692 29303847 ~ 29333867 (+) True XLOC_014112
TCONS_00028125 mRNA downstream 1003634 29337789 ~ 29363779 (+) True XLOC_014113
TCONS_00028126 mRNA downstream 1463909 29798064 ~ 29800205 (+) False XLOC_014116
TCONS_00028127 mRNA downstream 1463951 29798106 ~ 29800812 (+) True XLOC_014116
TCONS_00028128 mRNA downstream 1474316 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028109 other upstream 148186 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028091 other upstream 1360007 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028082 other upstream 1485558 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 1714732 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 2098504 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028122 other downstream 868987 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028123 other downstream 969692 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028134 other downstream 1520094 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028136 other downstream 1524881 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028142 other downstream 2184300 30518455 ~ 30518573 (+) True XLOC_014123

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_09453616_09482480.mRNA True 3934 mRNA 0.43 19 CI01000054 9452109 ~ 9482723 (-)