RNA id: TCONS_00028148


Basic Information

Item Value
RNA id TCONS_00028148
length 3304
RNA type mRNA
GC content 0.41
exon number 14
gene id XLOC_014131
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30867845 ~ 30884054 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGGTTGATTCCAAAAGGAACGGTGTATACGAACAGGATCAGTTTATGTTTTAGTCGAGTCGATTTATTTTTCAAACTTTTGAGATAGCACTTAATAACTGGCTTCACAGGAAAGGTGTAAACGATTTTCAAATTTTAAAGCGAGATGGCAAAAGGAGAGGGAGCAGAGCAGTACACCAATACCAGCCTCTTACAAAAACCCAGCCCAGACGAAGTCAAATTGGCGAAGCATGAAACAAAGAGCCGGTTGTCGGTGTGCAGCAAGTTGTGTTATGCCATTGGAGGAGCACCATATCAGATAACAGGATGTGCAATTGGCTTCTTCCTTCAGATCTACTTGCTGGACGTTGCTTTGTTGGACCCATTCTATGCCTCCATCATCTTGTTTGTGGGTCGAGCATGGGATGCCGTCACAGACCCTACAGTGGGATTTCTTGTCAGTCGGACTCCATGGACAAGATTTGGACGAATGATGCCTTGGATTGTTTTGTCTACTCCATTTGCTGTACTTTGCTATTTCCTCATCTGGTACGTGCCCTCTGTTGACCAAGGGAAAGTTGTCTGGTATCTAATCTTCTACTGCTGCTTCCAAACATTACAGACATGCTTCCACGTGCCCTACTCTGCTCTCACCATGTTCATCAGCACTGAACAGAAAGAGAGGGATTCGGCTACAGCTTACCGAATGACTGTTGAGGTTTTGGGCACACTCATAGGCACTGCTATTCAGGGTCAGATTGTGGGAATGGCCAATGCTCCCTGTATCAGCACTGAGATTGACCTGAACTCCACGGGTTTGGAGGTGGCTCCTGACGTCAACATCACTGACCCTCATGTTTCACTGCAGGACCTGAGAAATGCTTACATGATTGCATCTGGTGTCATCTGCGCGATCTATGTTGTCTGTGCTGTGGTCCTGTTCCTTGGTGTGAAAGAACAAAAGGACACATGCAGGGTGAGGACTGAGCCCATGTCATTTTTCCAGGGTATTTGCATGGTAATGGGTCACGGTCCTTATGCCAAGCTGGTCATGGGCTTCCTCTTCACCTCTCTGGCCTTTATGCTTCTGGAAGGAAACTTTGCTTTGTTCTGCATCTACAACCTGGGCTTCAGAAATGACTTCCAAAATGTCTTGCTCGTCATTATGCTCTCCGCCACACTTGCTATCCCATTTTGGCAATGGTTCCTCACGAAATTTGGCAAGAAAACCGCAGTGTATATTGGGACTACATCTGTGGTGCCTTTCCTGATCTCCGTAGTCTTGGTGCCAAGCAGTCTTGCTGTGACTTACATTGCGTCGTTTGCTGCTGGAGTCAGTGTAGCAGCAGCTTTCCTCTTGCCATGGTCCATGCTTCCCGACGTTGTAGATGATTTTAAAGTCCAAAATCCTGAATCTCAAGGCCATGAAGCCATCTTCTACTCCTTCTATGTGTTCTTCACCAAGTTTGCATCTGGAGTTTCTTTGGGGGTCTCGACTCTTAGTCTTGATTTCGCTGGCTATGTGACGAGAGGTTGCACGCAACCCGGTGAAGTCAAGTTAACCTTGAAAATCCTGGTGTCTGCTGCTCCCATAGTCTTGATCATTATCGGACTGCTAATATTCATCTCTTATCCCATCAATGAGGAAAAGCGACAAGGCAACCGCAAACTGCTTAATGAACAAAGAGAAAACGAGATGGATTCAGAAACGGACTCCACTGAGCTCAATGTGGTTTAATACCACCAAAAACCCTGGACGGGACATTGTGCCATTTGAGTTGGACCAACAGAGCTGGAACAAACCAGAGCGAATACTCTGAACCAACCATGCCTTGTGGCTGAAAGCTTCCAGCATCATCACAAATATGGATCAACTGGAAACGTAGCCTGTGCCAGCTCAAGCTCAATGTGCCTTGCCATTTTCAGTTGCAAGAACTATTATGGAGTCGGCTTGTATGTGTTGCCAGGATTTGTCCTGCTtactggttaaaaacaaaaaaagccagcTTTTGAAAAGCACACATCTATATACTGCACTAAGAAAATGACGAGGTGGGACATATCTACCTTTTAGATGAGACTTGAAACATTTACAAAGGTTTTTAGGTGCTAAAACCAAAAATGCTTTTCAATCTGATTTGAAAAGTGCATTTTGGAAGGAATATCTGTGAACTGTACACTACAATGTttgtatgtaatttaatatttataaatgcttTTGTGCTTCTAACTAAATGAGCAAACTTGAAACCATGACACCAAGTGGGGTTTGATTACATCAAACTGTAGTATTGCACACAAAGTTACCACCTTTTTCTTCTTGTATTACTTTCCTTTTCATCTTCGTGGGGCGTACAGAGGGATGTGCTGAGGGAAAAGTGTACAAATTTGATCCCTCAACACCTTCGAATTAGATCGATCAATATCCACTAAAGTACTGCTGAGGCTTTAAATTAGATGAACGCCATCAGAATGTGTGGGCTAGAAATGTACGATTATTCCTTCTGGTGAGAGGTGAagattatttaagtatttattactTTTCTTTTAAATCATATGTTGATTTGATTGTCTTTTTCTCTCATCTTCCTTAATTTATCTTGTTTAAGGGCCTGTCACATAAAATAAGGGCAATTAGGGTAGAGCTGTCACTGCTGAATTATATCTATTATGCCATTAATTCCTATGGAACAGCCAACCAGTGTGTTTACAGGTGACACTACTGTTTGTTTAggtgttaaatgaatttgatttcTGGTCTGATCGTTTTGATTCACCGTCTAGTCTAGTGCTTTTATTATTGTATAGTATTAATGTTGGTTCTCAGCCTGTAACTAAGTGTCAAAGATCTGAATGCCAAGTGTTCCCTACAAATGTGTACGTGCTGTGAAATATGTACATAAACCTGTTTTCATTTTCTATCTTTTGGGGGAAAATGGAATTATTTGTAAATAACATTTGTGTATATACGAGTGTTGTATGTTATACATATGTACATTTGATGCACATTGAACTCGCATCGGTGCAGTTTTTTTGCATGTTTCTGATTAATACTGTTTTCTAACATGTCAGTTTTGTATTGATGCAGCATCTGTGACATTTCGATTGCTCTCATTAACCCCAGTTTGTGGTTCTCTGTCAAGATTTCCGCATTCTGATATCAAAAATacagttaatgtaaataataaatgtgcTGATGTTTGTacaaagattttatatatatattttggatggaatcctaaatgtgtgtgtgcgtgtgtgtgtgtagttatttaaaagaaacaatggaaataGTCGTTAATAAATGGTAATTGATATTAAAA

Function

GO:

id name namespace
GO:0060856 establishment of blood-brain barrier biological_process
GO:0051977 lysophospholipid transport biological_process
GO:1990379 lipid transport across blood-brain barrier biological_process
GO:0015908 fatty acid transport biological_process
GO:0071702 organic substance transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0006869 lipid transport biological_process
GO:0045056 transcytosis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051978 lysophospholipid molecular_function
GO:0015293 symporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-89 Predicted to enable lysophospholipid:sodium symporter activity. Acts upstream of or within lysophospholipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 15. Orthologous to human MFSD2A (major facilitator superfamily domain containing 2A).

Ensembl:

ensembl_id ENSDART00000047461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029724 lncRNA upstream 24612 30841639 ~ 30843233 (+) True XLOC_014130
TCONS_00029956 lncRNA upstream 31640 30832290 ~ 30836205 (+) True XLOC_014129
TCONS_00029955 lncRNA upstream 65857 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029723 lncRNA upstream 142142 30724996 ~ 30725703 (+) True XLOC_014127
TCONS_00028144 lncRNA upstream 277894 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00029725 lncRNA downstream 84958 30969012 ~ 30970025 (+) True XLOC_014133
TCONS_00029957 lncRNA downstream 254773 31138827 ~ 31153090 (+) True XLOC_014137
TCONS_00029958 lncRNA downstream 273593 31157647 ~ 31218099 (+) False XLOC_014138
TCONS_00029959 lncRNA downstream 366866 31250920 ~ 31348348 (+) False XLOC_014139
TCONS_00029960 lncRNA downstream 366887 31250941 ~ 31279906 (+) False XLOC_014139
TCONS_00028147 mRNA upstream 182971 30662529 ~ 30684874 (+) True XLOC_014126
TCONS_00028146 mRNA upstream 184167 30633453 ~ 30683678 (+) False XLOC_014126
TCONS_00028141 mRNA upstream 351165 30495109 ~ 30516680 (+) True XLOC_014122
TCONS_00028140 mRNA upstream 399611 30450125 ~ 30468234 (+) True XLOC_014121
TCONS_00028139 mRNA upstream 438944 30423117 ~ 30428901 (+) True XLOC_014120
TCONS_00028150 mRNA downstream 652 30884706 ~ 30895272 (+) False XLOC_014132
TCONS_00028151 mRNA downstream 906 30884960 ~ 30891182 (+) False XLOC_014132
TCONS_00028152 mRNA downstream 929 30884983 ~ 30895273 (+) False XLOC_014132
TCONS_00028154 mRNA downstream 934 30884988 ~ 30891369 (+) False XLOC_014132
TCONS_00028155 mRNA downstream 943 30884997 ~ 30886940 (+) False XLOC_014132
TCONS_00028145 other upstream 236785 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028142 other upstream 349272 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028136 other upstream 1007511 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028134 other upstream 1007639 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028123 other upstream 1546962 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028153 other downstream 930 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028157 other downstream 1258 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028165 other downstream 457969 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028174 other downstream 703877 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028175 other downstream 707470 31591524 ~ 31591540 (+) True XLOC_014144

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_08099220_08112291.mRNA True 3447 mRNA 0.43 16 CI01000054 8097675 ~ 8112291 (-)