RNA id: TU142408


Basic Information

Item Value
RNA id TU142408
length 2246
lncRNA type inter_gene
GC content 0.33
exon number 4
gene id G123277
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22860225 ~ 22863254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATGTTCGCTCAAGAGCCTGTGCATGCTGTCCTCCCACAAGTGCTCACACTCCCGCCGCCGCAGGACTGTGGCTGAACGACAGCAATGCCATGACTGCAGCCAGAGCTTCTGCAACTTGACGGCACTCAGAAGCCACCGGGAGAGACagcatggagaggagaggaactgggaggatgaggaggacagggtggtgagagaggaagaggagggaagcaCTGCAGTAATCTCTAATGATTCAACCTGAGTTTCAGTAGCCCAGCCTCCCCAGTCTCCTCAGTGCCACCAGTGTTTCATGACCTTTCAGGATGCAGAGACAGAAGAGGCATTTACGCTTCAAGCACCCAGTAGAGTATGAGAGACGTCTCAGAGGTCGCACAGTGTTTGCCTGCTGTGTCTGCGACTGAACATTCCCCTCCTCCCGCCTGCTCTCAGCTCACCAACGCACCCACAGCAAGGGAGTCTGCCCCCTACTGGACCAGAAGACTCTGTCCAAGAAAGCACAGATGGAGGAGAGGCTGAGGGTATAGACAATGAAAAAAACAGAGCTGGTCCAATGAGCTGTGAGCACTGTCATATCATCTTCAATGACCCTCGAACCTGGGAACGTCACATGACGGCCAAGCACCCCCCCATCCCTGTCGACACCTACTTCACCAGGGAATGCCTACCTGACTTCTAGACCTGCCAGGGGTCAACTGCGACCCTATCGCTGCTCATCCTGTGGAGAGAGATTCATACAGGAAAGCACTCTGACCAAACACGGCACCAAGGCACACGTCAGCTGAGAGAGGATGATTCTGGGAGCATAGATACCAAGATGAAGAGGACAATAGGGCTGTGATGATACCAGTGTCacaatattttttccatggcaaaaatgaaaacatgaaGCAGAACAGACTCTTTGGTCCttttattttccaagctaaaggtttaaatataaatacatgtgattctGGATAaaaaacataatgatgtttgtttccaacttCAAGGCTGTTTccccaaagaagttaaatccactttgtgttttgtttccttgccacgatactggTATCTTCCTGGCCCTAACATCTTGAAAAGCACCCGTGTCAAAATGGAGtagttttcaaaataaaagcctgaccATATTTATTATAGAttcacataaaaaaataaaaaattatcctGTAccctgatttaagatgaaaacaGACCAAACCAGCTTTTGATCATTTTGATAGCAATAATGTCTGTACTATGACATGTAAactacatgaacaaaagtatgtgaacacctgctcatcgaacatctcatccAAAATCATGGatattaatatggaattggtcccccctttactgctataacagcctccactcttttgggaaggctttccattagatgttggaacattgctgtgggtacttgatccattcagccacgagcattagtgaggtcgggcactgatgttgggagattagacctggctcgcagtcttgagttccaattcatcctaaaagtgttcgatggggttgaggtcaaggctctatgcaggcctgtcaagttcttacacaccgatctcaacaaaccatttctgtatggacctcgctttgtggacGGTGGCATTGtaatactgaaacaggaaagggccttccccgaattgttgccacaaagttggaagcactcAATCgtcaagaatgtcattgtatgctgtagaggtaagatttcccttcacttgaactaaTGGGCCTAGCACAAACCATGAAtaactattattcctcctccaccaaactttacaattggcactatgcattggggcaggtagcgttctcctggcatccgccaaacccagattcatccatcggactgccagatggggaagcgtgattcatcactccagagaatgtttttccactgctccaaatccaatggtggcgagctttacacctctcaagctgacgcttggcattgtacatagtgatcttaggcttgtgtacggctgctctgccatggaaacccatgcCATGAAGCTCTCAATGAaccgttcttgtgctgatgttgcttccagaggcaatttggaactcggtagtgagtgttgcaactagTTCTGTTACAGTGACTATATTACTGGCACACGTGTCATGagggcagtcaaattccacgtgaccatttagtcacgataattaggcttctccaagctctgatgctgctgatggtcattagtaggctggccactcgatttcgtctctgcgttatattggaCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142372 lncRNA downstream 5094 22854889 ~ 22855131 (-) True G123242
TU142370 lncRNA downstream 13762 22845750 ~ 22846463 (-) True G123240
TU142363 lncRNA downstream 20689 22838771 ~ 22839536 (-) True G123234
TU142368 lncRNA downstream 37206 22822697 ~ 22823019 (-) True LOC110538050
TU142371 lncRNA downstream 38409 22820600 ~ 22821816 (-) True G123241
TU142413 lncRNA upstream 12981 22876235 ~ 22877073 (-) True G123281
TU142415 lncRNA upstream 26478 22889732 ~ 22889979 (-) True G123283
TU142428 lncRNA upstream 55074 22918328 ~ 22918547 (-) True G123296
TU142431 lncRNA upstream 59940 22923194 ~ 22923601 (-) True G123299
TU142432 lncRNA upstream 60572 22923826 ~ 22924025 (-) True G123300
XM_036942890.1 mRNA downstream 6379 22853130 ~ 22853846 (-) True LOC110534486
XM_036942747.1 mRNA downstream 9375 22847803 ~ 22850850 (-) True LOC118936533
XM_036942621.1 mRNA downstream 14744 22839988 ~ 22845481 (-) True LOC118938551
XM_021624614.2 mRNA downstream 21724 22829783 ~ 22838501 (-) False LOC110538050
XM_036942632.1 mRNA upstream 1688 22864942 ~ 22882607 (-) False LOC110538076
XM_036942637.1 mRNA upstream 1688 22864942 ~ 22882607 (-) False LOC110538076
XM_021624653.2 mRNA upstream 1688 22864942 ~ 22882631 (-) False LOC110538076
XM_036942633.1 mRNA upstream 1688 22864942 ~ 22882631 (-) False LOC110538076
XM_036942634.1 mRNA upstream 1688 22864942 ~ 22882631 (-) False LOC110538076
TU142062 other downstream 482065 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 702691 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 141732 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 322386 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 416925 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1040585 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1295913 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile