RNA id: XM_036942633.1


Basic Information

Item Value
RNA id XM_036942633.1
length 7837
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110538076
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22864942 ~ 22882936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGCCAACGAAACGAAGTAAGTTGTATTTTCCACCTCGCTGCCGCGGATGCGTTCCAAAATTCAGCCGATAAGCTTATGAAATATGAAAAAAGTCACGTAGCAATATTATAGCAAAGTTACAAATGTCCGAATTTGGACAGCAGTGACTCGCCGGTGTAAGACACTCCAGAGAGGCCCCATTCTACATGAATCATCGCATCGAGGACCGGTCAAGATGCAAAAGTGGAACAATGTGAAATGGGAAAGGGAGCTTGGCGATGGTGGACCCCCCTTTTGCTTTAGTTGTGAAAGGATCTTTCCAGACCAAATCTCATTTCATGACCACTTTTGTCCTGCGGCTGGTTACATCTGCTCCTGTGGAACAGAGTTCTCCATGTATGTTGATATGATGGACCACAGCGGGTTACATGAACCAGGCCACACTGTAATTAATTATAGCACCGTAAAGAAGGAACAAtatcagggggagagagagtacaaGGAGCAGCTTTCAAGGCTGGTATTGACGGCGGGGCAGGGAAGCTGGGCTAAACCTGGACTGACTCCGATGCTATCGGCCACTATGCCACGAGCCACAAAGCCTCCACCTGGTCCAAGTGCCCCAACAACAGACCTCTGGCACCAATTCCAGCCAGTGGTGTTGGTGGAGACCCTGCGCAAGTTTGGAAGGACAAAGCCCTACAGGTGTGCCTACTGTGAACTGGGCTTTGCAACAAAAGACTTACTCGTACGGCACCACAACACTCATGCAAGAAATAAAGTCCATGGCTGCCTGCAGTGCGGGGTTCTCCTGCTCAGTAACAACAAGTCACCACAGCCTGGCCACCACCAGTGTGGCTCATATCGGGCAACTCCTGAAACCAGATTTACCACTGCCACAGTGCTGAGTAACAGGAAACAGCCTGTGGGGAAGGCTCAGAAGGTTGTCCAGCGTCAGCACTGTCCTGACCCGTTCAGTGGGGAGCTGCAGCTAGGGATGCACATGGTCTCACAGCAGCCTGTTCCAGGGACTTCTGGAACAAAATACTTGAAGTGTAGAGTGTGTCAGGAGCCCTTCCAAACTGTCAAGCTGCTCGAGAGGCACCGTTGCACAATGGCGGCATCCTTTTTTGCGCATGAACTGGGTCTAACATCTGGCAAACAGCTTAATGGTCACAGAAAAGGGAAGGAGGGGACCAGCCCATACTCCTTTCCTCGAAGGAATGGTGACAAGGAGCTGGCGTTCAACATTCAAACTTCAGCGAATGTAACTGTATACGGCCACAAGGCAGTAGGCCCGGATAGGGGCACCGGGTTGTCTGCCATTTCTGTAAAGACTGAGGTTTCAGATGATGACTGTTTTGTGATTGAGGATGCGCTTtcgtgctagtcggaactaggaaactctgaaatTTCCGACTTGCTGACTGGTTGAGCACGTGTATAACAACCAGTTAGTAAATCGGAAATGTCTGTGTTTCCTTGTTCTGACTTGCACGTGAATGCGGCATAAAAGCTCCTTCACCAAACCAAGTCAGCTGTCATACCAACAATGAACCTCTTCcctctcagtactacagacatGAACAGTGCAAAAAGAATTCCCAATGTGAACCCTCTGCATTTGCAACAGACAAATGTCTTCTATGGGTATGGGCCCTTTTTGTAAGGTACCAGTTTAACTCTAATCTAACTACTCAAAATACAACTAATCTGTCAGTAGCCTaggtattattttattttttatcaattgtGTGTTTGTCAAATGATATTGAAAATGTTACATATGCAGTATCAAATCAGTCTGGATGGTTCATATAACCACAAACATTGTATGAAAGTTTGTCTTTTGaaaattctgttttttttttgtttttatttatttatttttttaacagtaACTTTACTGAAAACTTGGTATAAGCAGCATTGGCCATATCGCAAGAACATGTTGGTTCTTTTTAGCCATTTCTGTGGTCTTGGaataaaatattgtttttttccgctctctccctttcctttgtAGCAACTAAGGTGTAATAATCTGTGTTTTTCGTATTTCAGGGACCAAGCAATAGCTGCAGCCATAAGTGATTGCTGGAAAATGCTATACTGGACACTCCTGacctgcaaaacattttttttctccagagatACTTAAAATTGTGTTACGGTTAGAggtagggttaaggtaagagACAGTTTAAGATTTTGGTTAGTTGTTTTACAAGTCAGGGTCTCTTTTTTTTAGCCTCTGCCAAGAGAGCATGATGGAAATGCAGATCATATATTCACTGATTGCTTGGGATAGCGCTCAGACATAGTTTGTCACTTGTGAATGCACATAGCACACAAAAATAGGGGTTTGTTGTCTTTAGAATATTTTTGCTATCTCATGAGAATTTTATACGCACTGCACTGTTTTTTTggtaaacttttttttattttacaccgGTTGTCCACCTTTGATGTAGGCAGGCACCGCAACGCCATTTCCGTCCTACCGGATGTTGAGTGAggagaaaaaacaattgaatcacgAATACAATAAGCTAACATTTCAAATTATGGCACACACCACTGTATCTGAACGTTGGCGAAAACATCAATGTTATGTGCAATGCATTATTTATAAATATTGATATTTGTCGGGTTTAGACTACAACACGGTATGttgacattagctagctagtagcgTTCATCATGTCGACAGCTATCTAACTGGTGGTTCGAGGACAAGTTTGCACTAACACATTTTTGGGTACTTGGAGACGGTAGTGGCCGTTACCTGGCTAGATTGTGGTGGAAGACGAGACGCGTGGTTTGAACAAAAGCTGGGTGATCGTTCTTGCCTGGGCTGCTATTGGAGGATCTACGTTGAACATTTACATTTTCGTCATCAGTCCCGCCAGAGAGCCTACCTAAAAATAAAGACAAGCAAGAGACTGACTGACATGGGAAGTAGAATTTCCTTCAGTAGAGGAGTCAATGATGAGGAAATGGTCAGCCTTATCTGCTGCCCATAGCAACCCTCCTAAACCCTTGCCTGCCCTGACTAACGAGAAACCGCCATCTGAAGAGAAGATCAGCAAGGAGGTGGACAACTGCCATAACATGCCCCCTATGAAGGAGCCCTTACAAAGACTCCAACTACAGAGAGAAAGTAAAAGCCAACAGAACAAAGTGGTGGCTGAACCCTCTGACACACGGTCACTACCAGGTACCCCTGTTTTGGCTGTCCTTCCTAATCCCGGAGAGGTAAACTCTGGTGGCATTAATCGCAGAAGAATGAGCACAAAGATGCAGGCAAACATGGAGAAAATGCATGTTAATTCACATGCTACTGGTCATGGTAGAACTCAATGTGAAAGTGCCAATCCTGAAGTGCATTTATCACTTACTGGGAGTGAGCAAACATTGAACTGTATCACAAAGGAGCTGGTGGGTGTAACAAGGCCAGCAGCGGTAGACGTTGTTAGGAAACGTGGTCGCCCTCACAAGAAGGCAAAGATGCTGCATACTGTGCTACAAACAGTGGAGAGTTCTTCTCATCTGAGCACTGCAGAATCAAAGGATTGGAGTGAAACAATGTCTGACAGAGCGAATTACATTTCTTATACTACAAACTGTGTAGAGAACAGGGATGACACATCTCTCAGAGCTATTGAAACAAAAGCAATATCTCTAAACCGTGAACCAAGCAATACAGCGGTGTCTGTTCTTGACTCGTCCCCCAAAGACCATCAACCAGCTGAATCCAGCCCTGTGGCTATCTCACCTTTGGAACCAAAAAGGAAAAGGGGACGACCAAAGGGTTCGACCAAGAAACAACCAGGAAAAACCATGAACACTATTTCAGTAAAACAATCCCATGTAACAGAAGAAAAAATGGCAATTAAAAAGGAACCTGATGAGATGCTATctgaagaggaaaagagaggaaacaTTGGTCCTCAGCCTGAGAAAACTCCTGTTGAACCTAAACACAGAGTAGGACGACCACCAAAGAAAACAACACTCGTGAGGCAGTTTGCGTTAGCACAGAGAAAATCACAGAGAAAATCATGTTCTATTACAGCATCTGTGAATTCCCAGGATATTCCACCTCAACATCAGAATATTGAGACTGAGCGTTCACTAGATTATATTGCAAGGCATGTGTCTGTGTCACTTAGTCGCGTTGATTCTCGGCGAGGTGGGACTGCTGACATGATCTCTAATGTGAAGTGTGAGGATATTGAAATAGAGCTGGGTGATTTTAATTCCCTGGCACAGTCAAATTGTCTCATGTCTTTTCAATGCCACACTGACACCAGTGTGAAGGTTGAGTCCTGTAATACTAGTTGTGAAGGCACTGAGTTCAAAAAGCCACTCAAAGTCGACAAATCAGGAGAAACTGCTGGCACTGCTCCCAGAAAGCGATCCCGGTTTGTTTTTGGAAAAACTAAATACAAAAAAGGAAAGAGGAAAAGGTTCATTGATGATAGAGGTAGACTCCAACGTGTGACCTCACAGGGAGATCCAGACACCATGTCAAAGCAGACCGATGAAGGCAGTGGTGATGTTGGAGAGGAGATGGACTGTGGCGAGTCAGCTTGGGAGTATGAGGGTAACACAAATGACAGCTTTTCAAATGAAAGTAAGTCAACAGATGAAGGATTTAAAGATTTGCCTGAGAGTCACCAAAATCCTATCATCACTGATGTAAACATATTAGAAACTATGTCGCATGAGTCCTTTTCGAAATCAGATGTCGTACAAGGTGAAGAATTCACAAGTAAAAAAatcaaggaagagagagatggtgcAGGCGATGAAACTGAATATAACCCAACAAGCAGTTGTGGCCTGAAGGCTCGGGGGAGACCAAAAGGGAGACCAAAAGGCACAGGGAAAACGTGTGAGTACTGCGGTCGCCATTTTGATTTTGTGTCTGTATATACCGTCCATCTACGCACTCATACAGGCGAAAGGCCCTATAAGTGCATTGATTGTGACCAAGACTTTGCCCAGCTATCTAACTTAAAAAGTCATGTCAAGAAACATAACAAGCGCTGTCGGCCTCTGAAGTGTCCTTATTGCAAAATGAAGTTCAGTAATTCAAAGGAATTGCTTGCTCATTGCAAGTGGCACTCGCAGAACCCGAACCAGGACTCTGAGTCTGGGAGTAAAACGAAGGATAACAGAAATGAGGCCACTCATACACCCCTTGTTTCTCTGAAAGAAAGGAGAAAAAGGGGAAAGGGGGGGATACTCAAATGCCACATTTGTGGGAAAGTGTTTCCCTTTTGGTCTGGTCTGCAGGTTCATATACGTATGCACACTGGGGAAAAACCATATATCTGTAAAGTATGTGGGAAAGCCTTTAGTAATCGCTCATCAATTCGTATTCATGAGGTGACACACTGGTCCATTAAGCCTTACAACTGCACAcggtgtgggaagagtttcactcAGTTGTCGTCTGCAAAAAAACATCCCTGCAAGGGTCTGAGGGAGAGTAATGACAGAGAGGGCCGGAAGAAGCCTTTCATATCTTTTACATGCCACATCTGCGAAGAGAGATTTGTTCAGAGGCGTCAGTACAAAACCCACCTGAAAACCCATGCTGGTGTGAAGCTCTTTCGCTGTTTATTCTGTGACCAGCTGTTTAGTGTGATGTCAGAATTTGAAGAGCACCACCAATATTGCACCAAAGTTAGGGGGGAGAAGATGACATCCAAATCTGAATTTAGGATTTGGAAACCTAGAGCCCCTAATCAGCAAAGATCGCAGCAACCAAGTGTCAAGAGTCATTCACCAGTCACCCAATTAGTATTTCCTGCAGCTGCTGATAGTCAACCATTTCAGAACCTTGGACAGACTTCAGCTTCCTCTGTCTCGTTGTTGAACTGTGAACCTACCCCACAGCAAAAATCAAGTGGTCATCAGTCTTCACAAacacatgccaataaagccattgcTACAACTCTGCGCCCCTTCCAAACATGCATTATACCCACAAATAATCTCACCCCACTTGTATCAAAGTTGAACAGTCTAGATTGTAAATCTGACCCGAGGAAGTACTTCTGCCCACGTTGTGGAAGACTTTTCAGACACACAGGAAGACTCAGAGCCCACATGCTAACTCATGCCCACAGTCAGAGCTACACCTGTGACTGCTGTGGAAAGACCCTGGAAAGCTGGAAAAAGCTTTGGCTTCACCAGCGAATCCACAGACAGAAACTAGGACGGTTCTCATGTCCAAAGTGTCGCCAAGGTTTCCGCTTCGTTGGGCCCTACAAGCAGCACATGCTGCGAGAACATCCGGAGTACCAGTGGATCGATGAGAGACCAAACAAAACTCTCCAAGGACTTGACCAGCAGCAGTGCCTGCCTTATCAATGTGAGGAGTGCAACGCCAGCTTCAGGACACTAGATATGCTTTTCAATCATCAGCTTTGCCATTCCTCACCAGGTGACCACAGTATGTGGATACAGGACGACTGCTATGATTACTCTCCCTCGACACATGAACATGATGTACCTTCCAACATGAATGGATTTGACCCTCACATGAACAGTGGAGTAACACACTCCCATCAGGAACTCCACCATACCTACTACCCTTCTCCGCCTCTACAAGCAAACCACCCACGAGGTTCACATCTCCTTCATTACTTTTCCAATCATTCAGACCTACTACATTCACTGTCACCCCTTATACCTGTGCCTCCCCCAATGCAACACCCAGGTTTCCAACCAGGCCTCCGGTCTTATGACTCCACCCAGCCGCTCACAAGCCCTCTATCGCCACTATACTCACAGGTAAAGATCATTCCATACCCTAACAGAAAAGATGGGAATGTAAACAGGAAGCGGAGTAGAATTTATGGGAATGCGACTAAACGTGCTGCTAGATCCAAGGAGGACAAGGCGACAATGAGAGGTTTGGATTGTGCGGAGTGTGGTGTTCAGTTTCCTGCTGTCTCACAACTCTATGAGCATTATTTGCAGCATGCAAGGGGAGAGGTGTAAGAAGTGAAAATGAGGAACCTTTTTCTATCACAAAGGCACGTtatcccccatctctttctcagaGGTTTACCTCTATCAGTTTAGAAATTACTCATACGTCAACCAACAGTGGCATTTTTAACACAGAGGTTGTTGTATTGATGTGTTTGAGTGAATATTCTGTTGAATGGAGATTGTTACTCTGGTTGCTTGTTGGTCATTAGGGAAGCTGATTACTTTTGGTTGTTATTTGAATGACTTACATTGATCAATTTTAAATTGACAGTATTTAATTTTTCGTTGGCGAGTGTCCCTTAATCTGAAAAGATGGTCAGTGCTTTTATACACTTCAGTAGTTTTAGCAGGTTTTGAGACGAGGACAGATCATGCCCTGCAATCTATTTTTCAATGGAAGTTTGAGTGTAAATTACAATGCTTGATCATGGAACATTACGAGGTATGACAATGTCATTGTTAACCTCTTCCTGTCAGACTCTGATTCTCAACTGATGATTTATGTAATTTAGGCTACCAATACAAGTGATTAATATCTATTTTAATTCTGTCCATTTATTTAAAAGAAAATTATAAACCTCATGTTTTGCATGTTAGTCATTTATACTGTGGTTGTGTTCATTTGTAACTTAtgcaaaaataatattttcaCTGCCAGTACTCTAGTCTTTTTAACTAATAGGCCTACATTCCCTCATGTTTACAGAAAGTTATTTTGTTTAGAAAAGCCGTTCTTGTTCTGTTGCTGATGAACTGACAgctgtttacatactgtatattttactTTCCAGTTTCACTCAGTTATTAATGTGTCAGACAAAAATAAAAGCCACCTTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142408 lncRNA downstream 1688 22860225 ~ 22863254 (-) True G123277
TU142372 lncRNA downstream 9811 22854889 ~ 22855131 (-) True G123242
TU142370 lncRNA downstream 18479 22845750 ~ 22846463 (-) True G123240
TU142363 lncRNA downstream 25406 22838771 ~ 22839536 (-) True G123234
TU142368 lncRNA downstream 41923 22822697 ~ 22823019 (-) True LOC110538050
TU142415 lncRNA upstream 7101 22889732 ~ 22889979 (-) True G123283
TU142428 lncRNA upstream 35697 22918328 ~ 22918547 (-) True G123296
TU142431 lncRNA upstream 40563 22923194 ~ 22923601 (-) True G123299
TU142432 lncRNA upstream 41195 22923826 ~ 22924025 (-) True G123300
TU142451 lncRNA upstream 48305 22930936 ~ 22931634 (-) True G123310
XM_036942890.1 mRNA downstream 11096 22853130 ~ 22853846 (-) True LOC110534486
XM_036942747.1 mRNA downstream 14092 22847803 ~ 22850850 (-) True LOC118936533
XM_036942621.1 mRNA downstream 19461 22839988 ~ 22845481 (-) True LOC118938551
XM_021624614.2 mRNA downstream 26441 22829783 ~ 22838501 (-) False LOC110538050
XM_021624738.2 mRNA upstream 1347 22883978 ~ 22899520 (-) False im:7147486
XM_021624747.2 mRNA upstream 1347 22883978 ~ 22899520 (-) True im:7147486
XM_021624595.2 mRNA upstream 24455 22907086 ~ 22949770 (-) False LOC110538037
XM_021624604.2 mRNA upstream 24455 22907086 ~ 22949770 (-) True LOC110538037
XM_021624811.2 mRNA upstream 70950 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
TU142062 other downstream 486782 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 707408 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 122355 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 303009 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 397548 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1021208 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1276536 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile