RNA id: XM_021624738.2


Basic Information

Item Value
RNA id XM_021624738.2
length 5238
RNA type mRNA
GC content 0.46
exon number 2
gene id im:7147486
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22883978 ~ 22899520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGATGAAGACCACCTGGAACGCACCCATTTTTGCTACAGCTGTGCAGCAGCACACATCAACCGAATACACGACCTGAACAGCAGCGTGGCTGCAAATAATATTTCTAAAATATGCAAATTAATCGGTATTGAACGAAAGTAGCCGTGGATGATACAACATACTGTAATACATTAAATTACTGATGGAAACTGACAACCCAAGATCAGCCAGTTGAGGACACCTGAGCCCCCCTTTGTACTGTGACTGTCTTGTACCACAATGCTTGGCCTTCAGGGAAGCACCTCATCCCCTAAAATGTATCGCTGTGTGGCTTGTTCAGCCACCTTTACTGGATTGGCATCCTTGTTGGTGCACCAAGCTTCTCATGCAGTTCAATATGACAAGCAACCACCACAATCTGAGAAGCAACCTCTCTGCACTCACTGTGGTGAAGTGTTTTTAAACAAGGAGCTCCAAGACCAGCACTGCTGCAAAGCACTACCTGAGACCCTGGCTCCCTCTCTTTTTATCTGTGATTGTGGGGATGAGTTTCAGAACTTTAATGAAATGCTGGAGCATAAAAGATCTCATGTCTCAACCCCCCAGCAGCAGACCCAGACGACTGATGCCAGATATTCGGGCCAAGAAGAATGCAGTCTGGTTGAACCTGTCCAACCAGTCTCCCCTCAGCCAACCCTTAGTCAAACCATTTTGGGCCTCGgtcccccctctcatccctcacccCCATCTCCTGTCATTCGTAGTTCAATTCTCCCACAGCTTAATAGCACATCCACTGTTCCTGAAGTCTATACAAATAAGGGGTTTATTGCCCTAACCAGACCTCCAGAGCTGAACAACCTCCCTCCAGGTGCAAGTGAGCAGGAATTACAGCCTGATGGGCTTGACCAACCTGAGAACATCTCTACTGCACAGGAACCCTCGCCACAATCCATCCAGGATGAGACTCCTGAGGATGCAGACTGTCCCGTTACAAGCGGTGCATCTTCAGAAGATGCCGGCGCATCTAAGAATGAGACAATAATGAAGATGATAGCAAATGCCTACATGAAACGTTATCAACCTGCTCAACACTACCCATTAAGACACAAGAGACTTGTGGTCCCCAAAACAGAGCTTATACCAGTGGAGGTGATGTCACAATCCAAACACACAGCAGCATCCACACCAGGGCCCTCTATTGGCCAGTTAAGACACCTGCTTACAAAGTCTGGTGCAAAGACAATAGCCCGTCCATCTGGCAGTAGTGGTATCATATCTTTGACTCAAACCTTCTGCCCTGTAGTAGTTCTTGAGACCCGCCAAAAGCTTATTGATTCTAGAAATAGGGCCACACAGGGGAGATATCAATGTGGTCGCTGCCGAAGTGTTTTTCAGGACTTGGACAGCTTGACAGTGCATCATGCCTTACACAGGAAGGAGATAGTGAAGTGTTGTCGTCACTGTAAACAACTGATGATTGGAAAACCACCCCTTCCAGACAACCACATCTGTCCCCTGGCTCCCCACCACCTTACCTCAGTGGGGAGTAAATGCCACTCTATCAAAAAGACTGCATCATTCCAGAAGCAAAAGAAGCGACAACCGCAAAGAAGCTTCCAAAGTGTTAAAGCTAGGACGCCTTACTTTTGTCAAGTGTGCAAGCACAACTATGCCCGCAGGTATAATCTCAATGTGCACAAGTGTCAGGGGCCACCCCATCCTCCTCAGCATGCCTCCAACTCTGCCCTGTGCAAAAATACTGCATTTGGGGAAAACATTAAAGCAAGGGAGCCTGTCACAGGCGTCAACCAGAGGCCTCTAATCTCCAAAAACATTGGTGTGGGCACTGACAGCACTCGTCAGATAAAGGAGGAGGCGATTTCTGCAGAATCAAGGCCATATCCACAGTTTCCTGATTTGCTCTGGTCCGGTTCACCTAAAAGCTTCTCATCCTTCTATCCCGAAGTTGCCAAGCATGTAACACCAGGAGAAATTGATTCAGGATCTGCAACACTACAGCAAGGAGATGGTGAAGGGGACAACGCAGCAAGTAGTTTTAAACAAGAAGGTAAAGATGGAGAATGGACAATGCCTTTAGATGATTCTGAGATTGATGTTCTGATCGAGGCAGTAGATGCAGAAGACGACGATGATTTAATGCTACAAGAACCTATTTCTCAGGGTCATGTCAAGTCCACAAAGGATGGCGTACCTTATTTCATAAAAGATGGTGCTAGACGTTTTCCCTGCTATAGATGTCAGAAAACGTACAGTCGAGGGTGCACATTAAAAAAGCATCAAAGGCTGTGTGGAAATAGGTCATTTCTGCCACAATCTACTTTTCGGGCGGTAGCACAGAAAGTCAACAAGGGTCAATTCCAATTCGATTGCTCTGTCTGTGGGAGGAGCTTTAACCGCAAAGATAACATGCTGATTCATAGGAAGAAGTGCCAGTTAAGTAGAACCGTGGCCAAGAATGATAATGGACTTTTACAACAGGGCTTATCAGCAGCCCAGGCACCGCAACGTCTCGTGGCACAAAGTAGTAAAAATCTGGAGGATAATGGGGCAAATTGGGGTATTATGTCATTGCCCAATGTTCTTCCCAGGAGAGTGACGTGTGAGTGTGGGGCAGGCTTCACTTCCCCACGGCTCCTCCTGGAGCATTTGCAAAAGCATGCGCAGGAGGCCTATACCTGTCCCACATGCGGTGAGACACTGAGTTCCTGGGCAGACTATGAAGTCCACCTACAAGTACACATGCAGCCTCGGCACCAGATGTATGGGGGAATGCAACAGCAGCGCTCTCCACCTCTACTGCTGAGGTTTCCACAGCAGCCACGTCAACGTCGGCAGCCCCTGCCAAAGCAGCGACATGCGCCTCCGCAACACTCTCTGCCAGCACAGCGCCCTCAGCCAAATCAACAACCTCTGCGGAAGCCTAGGAAGCCACAGCCGCGCTGTGTGTGCATACGATGCAGCAACACCTTTTGCAGTCGCGGCGCGCTGCTAAAGCACCTCTCCTGGAATCGGTGTAAAGGTGACAGAGGAGCTATTTCAGCAAAGGCAAACCACTGTTCCCGATGCAGCATGGACTTCCCCAATGGCCTTAGCCTCAAGTTTCACCAGCTAAATGGAATGTGCAAGCCTGCCTTCAAGCCCATGCGTTGCCCTGTGTGCGTGCGCTGGTTTGGCACTGTGGAGGGACTCCAGAAACACCTGCAAACACACGACCAGACCAACTCGTTTCGCTGCCTCATCTGCCAGCGCCTCTATCCCAGCCTACGATCACTGAAAGACCACCGCAGAAAGGTCCATTGCATTTTGTCTGGAGACACAGCGCAGGTTACACAATGAGAGTGAATACTCTGAAAATCATAATCCAACAGAACATCTATGAACAAtgattttagcaaaaatgtttttgcAAGATCTGTTATTGATTTGAGGGATTAATTGTCTTGTGTCACCATATATAATCATTATTGTACTATTCTACTTTGATTCTATTTTCACTGTCTCAGTAGAATTTTTTTCTTGCTCACTTGAACCTATTTTCATGGCCATAGTTGTAAACTGTTGTATTGTGCTGTAAAATGCAATGATgttcttaaagggatactttgggattttggcaatgaagccctttatctacttctccACTAATGAAGGAAGTTCGATGGGGTTACCGTAGACTTCGTcatgcgctaatgctagttaccaacttccttcaaactgcatgcagaggTATAAAAATGGTATTGACATGTTAATCGGACTGACTCTGGGAAATAAATtgaagggcttcattgccaaaatcctgaagtatccctttaactccTCAGCCATTATTAAAATGTACCACTTATTGTTCAAGTGCTCTTTTAGGTTGTGAAAAAACATTGATGGTTATATCTTAGTGTGGTAGCTGTCAGTGCATTTGGGAGAAAACAATTTGTAAGTGAATATACACTACAAAGTATGTgcacacctgctcgtcgaactcCTCATTCCCAACCATGGGCATTAATTGTTtggtcccccccctttgctgctataacagaatccactcttctgggaaggctttcatgtagatgttggaacgttgctgaggggacttgctttcattcagccacgagcattggtgaggtcgggcactgatgttgggtgataaggcctggctcgcagtcggcgttcccaTTTATCCCGAAGGtggtcgatggggttgaggtcagggctctgtgcagtcaagttcttctacaccgatgtcgacaaaccatttctgtatggacctcgctttgtgcacattggaattgttatgctgaaacaggaaagggccttccccaagctGTTGCGACAAAGttaaagcacagaatcgtctagaacgtCTTTGTATGCTGTAAAGTTACAATTTCCCGTCACTGGATCTAAGGGGCCTAAccccaaccatgaaaaacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattggggcacgTAGCAAACCCCCGATTTGTCTTTTGGactggtgatcttaggcttatgtgcggctgctcggccatggaaacccatttcatgaagctcccgactaacctttcttgtgctgatgttgttccaaactgcctctagaagcttggtagtgagtgttgcaacccgaggatagacaatttttacgcgcttcagcactcggtggtagCGTTCTGTGAGCTagatgttttcacttcacaataaaagcacttacagttgaccagggcggCTCTAAcggcagacatttgacgaactgacttgttggaaaggtggcatcttatgacggtactactttgaaagtcactgagctgttcagtaaggccattctactgtcagtgtttgtctatggagattgcatggctgtgtgcttggtttTATGCGCTTGTCAGcagcgggtgtggctgaaatagccgaatccattaatttgaagggctgtccacatacttgtgtgtatatattttaaCACTTACACCAAAACAAATGTATAGGAAATAGCATGTAGTGTGTTGCTCCTTGTTTTAATAAAGCCCCATTCAGAGATGAAAGATTTGAGTTGATTGTTGTCACTAACCAGGTATCCAACCATTTTATGTGTATGAATTACCTGATGCAGAAATATActcatgacaggcctgatggaaacagcaaatGTATTGGTAAAATGTCAAAATGTCGATTAAAATAAAATATGCTACACAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142413 lncRNA downstream 6905 22876235 ~ 22877073 (-) True G123281
TU142408 lncRNA downstream 20724 22860225 ~ 22863254 (-) True G123277
TU142372 lncRNA downstream 28847 22854889 ~ 22855131 (-) True G123242
TU142370 lncRNA downstream 37515 22845750 ~ 22846463 (-) True G123240
TU142363 lncRNA downstream 44442 22838771 ~ 22839536 (-) True G123234
TU142428 lncRNA upstream 18808 22918328 ~ 22918547 (-) True G123296
TU142431 lncRNA upstream 23674 22923194 ~ 22923601 (-) True G123299
TU142432 lncRNA upstream 24306 22923826 ~ 22924025 (-) True G123300
TU142451 lncRNA upstream 31416 22930936 ~ 22931634 (-) True G123310
TU142453 lncRNA upstream 32236 22931756 ~ 22990628 (-) True G123311
XM_036942630.1 mRNA downstream 1042 22864942 ~ 22882936 (-) True LOC110538076
XM_036942635.1 mRNA downstream 1055 22864942 ~ 22882923 (-) False LOC110538076
XM_021624653.2 mRNA downstream 1347 22864942 ~ 22882631 (-) False LOC110538076
XM_036942633.1 mRNA downstream 1347 22864942 ~ 22882631 (-) False LOC110538076
XM_036942634.1 mRNA downstream 1347 22864942 ~ 22882631 (-) False LOC110538076
XM_021624595.2 mRNA upstream 7566 22907086 ~ 22949770 (-) False LOC110538037
XM_021624604.2 mRNA upstream 7566 22907086 ~ 22949770 (-) True LOC110538037
XM_021624811.2 mRNA upstream 54061 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
XM_021624985.2 mRNA upstream 68531 22968051 ~ 22971540 (-) True LOC110538268
XM_021624724.2 mRNA upstream 219862 23119382 ~ 23123886 (-) False LOC110538089
TU142062 other downstream 505818 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 726444 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 105466 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 286120 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 380659 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1004319 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1259647 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile