RNA id: XM_021624595.2


Basic Information

Item Value
RNA id XM_021624595.2
length 9591
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110538037
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22907086 ~ 22949770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCGCAGAAGCTGTACTGCGCAGCCATAGAACGTATAGGGCGGGTACTTACAAGGTTCTCTTTCCTTTTCATTGGTTCTAATAGCATAGAGTCATAAATGTTCCCGGGGTTCGGGCACATTGTGTGATTCGATAAagagaaaaacaagaaaaaaagacATTCTGAAAAACGACAAAATTAGCAATATGGTTGTTGTGTTCACGGAAATGTCTAGCTAGGTAGTTACCTAAAGCATCGTGGGACCGTGGACAACAACAGGAGTCAGAACGGCGGCACGCAAAACTGCATTGCCTGCTTCATGGGTAAATGTAGCCTTACCCACATCAACCTGGACCCCATACACACATGCTAAAGCAGGTGGATTGGGTTTTGGAAAACAGTGTTCCCAGGTCACCTGTGGAGGTCGAGCATGGCTCAAGGATTTAACACTTGTTTTCGGAACCTTCCGCCATTGTCGTCGGATTCAAGGACTTTGAATGTGCCTTTGGAATCTGAAGATAGTTTGGCGCACCACCTTGAAAGTCTCATTGAACATAATGACCTTTCCAACACCGTGGTTTCACCGGAAAACATTTCCTCAGACTTGAACTTGAGTTCAAACTTTTTCTCAAATTCCAATACTAGTTCTGATTTTGTACAACAGAAATACTATGATGACGTCGTTTGGCAAGATGAGGGTCAACCAGTACATCATGAAGGTCAGTTTAATCACACAAGCAACAGCCTCTTTGCCTCAGCTAGAGCAGCCAGTTCAAGTAATTGCCTCTCAACTTCAGGTGCAAACCTAAACCCCCATGATCTTAAACAAGAATGTGACTTATTGAACCCTTCGATTCCAGAGGACTACTCAGATGTTAGTAGCTGCTCAGAGTCCAATGTtgacaggaaagggccttcttgTGAAATGTTAAAACATGGTTCAAATGATTCTCCACTGGTTGCAGATGACAAGAAGGAAAATGAATGTGCATGGAAGAGCCCAAAGACCACCACAGGTTCCCCAGAAAGCATGTCTACAAcagagagtgaggtagaggaggATCAAGATGAACCACCAGAGAAGGAAAAGAAGACATTCATGATGCAAGAGAATAAATACTCGGAGACCTCCGGTGCTCCAGAAAGCCTATCTGTTTCAGAGGACGAGGGAGAAAAGGATAATCTGGATGGAGAAGCACATGAGAAAGATGAGACTTGCATGGAGCAAGATGATCAACACACAGACTCTCCCTCAGGTGGCGAAAAAAGTTTGACTGCCTCAGTGAATGAGAGAAAAGAGGAACTGGATGATGAAGCACAGAATGCGGAAGAGGAATGCATGGAGGAAGAGGATCGGTACTCAAATGTCAGTAGCCTAGAGGGCCAAAATGAAGGAACCATTGTAAGCGAGAGCTTTAAAGAGGAAGAGCATTCATTATCCCAAGGAACTATGGACTCGCAGGGTATCGATGCATCCAATGCTCAAGAATCTGCTCACAAGCTGAATGATAATACCTGTGCCTTTGACTATCAGGATTCAGTAAAGGATAATGACTCTTTAAAGGTTGCTGGTCAAGAAAATGGCAAAAGTTCCTCTGTCATTTGTGGATTAGGCCTAGGGGGTAGCAATCAAACGTTTGAGTCTTGTTTGGAATTCCCTGAAAATCAATCGCTGAAAACTAGATTTCAGGAGATCGTTGGTAGTGGCACTCAAAGTACAAACTCAACCTATGAGGAAAGTGCAAGTGATTCCATTCGTGGAAGTGGAGGGAAAGAGGATCACAGTAGCTTTGATTTTTTGGAGCGTTGTTTAGGTCTGAACAACTTTGGAATTGAACAGAAGTCCTGTATTGAAAATGAGTGGCTAAGACCTATCGATGAGTCAAATGTATCATCTTGTTTGGAAGAGGACCAGGCATCCCAACAGAACCTAATGCGCCATATCAAGCCACCAGACCTTGTGAGAGCTGGTCTTGAAAACACACGAAAGACATTTCATAAAGTATACACAGCAGATGATGAGCAAGAACCCCCAGTGCTAAGTGAATGCTACGGTGAACCATTGTCAAGAGAAGATTGTATGAGTGACACCGAGGGTAATCAGGAAAGGGGGGAGACCGGGTCTATTGATTCAACTGAGTTGAACCAGGAGGGAGGAGATTCAACTATTGATAACATTGAAGACGAGAGGGATTTTGAGGACCAAGCAGCTCAGTTGAAATCCTCACTGCATATGAGGAAATGCATGCACCCTATTGTACTGCTCAGGAAGTCTGAACTAAAAAATGACACAGGTGGGGCTTATCAGTGTGCAGCATGCCAACAGGCTACACAAAGTATAGACCATCTAATTGAGCACCACCATTGTAACCACTCTGAGAACAAATTAAATTTCTGTCAGACCTGTGGTACTTACATGACATGTGATTCACTAGCCAAGAAACATCAGTGTGGTATTATTGATGAAAATGCACAACTCTCTTCTAATATGAAACCCCAGAAGAGAAAATCAACCGGGCATGCTTTTCACAAATGTAGATACTGCACACATACATTTTACAGACTCTGTGATTACAACAAGCATGTGCAGAGGCACTCGGGTAGAACTGAACATAAGTGTCATAGGTGTGGCTGTAACTTTTCACAACGTCGTAGTCTGAACAGACATTTACGTGAAAAGAAATGCCAGCGTCGAAGTTCACAAGTTCCTGTTAAACAGATTCAAACAACCCCACGTATCAGCATTTACCTCCCACCAAACAGCCCCTATGCCAATCTTCCAGATTGTTTTGTGAAACTAGTGGACATTTGCAAGGAGCATGTTTGTCGTCTTTGTGGGAAAAGCTTTGCAAGCAGTGCAAAACTCTACAAGCATGGATACAATGTACACCATACAAAAACCAGGTCATATAAGGTTCGGCCTAAGTGTCAGAACACATACAGGTCATATAAGTGTCAGAAATGCCTGATGACATTCAATTATTCAAGCAATTTTAGCAGGCACAAGAAAAGATGCAAAGGAGCTGAGATGAATGAGAAATTCAAGTGCCCTCTTTGCCCACGCCTTTTCAAATATTCCTACAACCGGTCCCGCCATTTGCGTGAGCAGTGCATTAAAGACTTTACACAGGGAATCTCAGGGAAAGTTGACATGAAATTCCGATGCCCCTTCTGCACCACCACCTTTACTAATGCTTCTAACCGACATAGACACATAAGACTGGTGTGCCTCAAGGAATATATACACAATGAGACTTCAAGGACCAAAGCTGAACGCCAGGAAAACATGGCCCAGAAAGAAACACAAAAGCCGCCACTGAAAACAGCACTGAATCAAAATGAGCCGGGTCTCAAATGCAACTACTGTCCGGCCATTTTTGCTCATTCTTCTGGGAAGTACAGACACATGAGGAAACATAAGTTGTTTGAAAACACTGGAAAAAAGATCAAGTTCAGGTATTCAAACATAATTCCAATTTCTAACAAGTCCAAGGCTAGTATTGTGGAGCCCAAAGACGGTCCACtctccagtgaagccagcagccAGCCCTTTTCCTGTCTCTTCTGTGGAAAATGGTTCAACACTTCATATTCCCTAAAGAAACACATCTGTAGTATGCACATGGGTGACAAACCATATCGCTGCCTGGAATGTGGAAAACGTTTTGGGAAAGAAATCCATCTTGTTGCTCACAAAAAAGTGCACCAGCGAAGGATACAGTGTACTGTTTGCAAGAAGATACTTCCTACCATTGGGGACTTGATTCAACACAGGCAATCTCACATCAAAAAGGGCATGCTTCAGTGCCCAGACTGCCCATCGCAGTTCCAGTACCCAGTGTATCTTCTTCGACATATGGCATCACATCACAAACTTCAGCAAGAGCAGCCACTCAAAGAGAAAAAACAGAGGCACCCCTCAAAACTTGAGCCGCTTGGGTCCTTGCCACCAGTCAAAGAGCAGGAAGAGGGAGAAAAGTTGGGGTGCCCCATATGCCCAGAGGTCTTTCACAGTGGCACAGAACTGAGTAGTCACTGCCTAAACCATGTATCGGAGTCCTCTTCAAGTCAGTGTCCGTTTTGTAAACGCCTCTTCTCTTCCCGCACATCTTTGGTGCGTCATATACGCATTCATACAGGGGAGAAACCATTTTCTTGTCAGAGTTGTGGAGAATCTTTTCGTCGAAAAGAATATCTCCAGTTGCACCAAGAAAAGTGTCCAGGTCCACAAAGCAAACAAGAACTGCCCACTATCAAAGAAAGTGAAAATGTCTCATCAAAATCTTTGGTGACAAGAATAAGGAAAGTATACAAATGTTCATACTGTCCTCGGGAATTTGAAAAATTGCCCCGTTTATTACTGCACCACAATGGCCACATGCAAAATACAGTAACCCCCTGTCCAAAATGTGGTAAATGTTACAGACAAAGGCGCAAGTTACATGAAAGACTTTGCAATGGCTCAAACATAAAATCTATAGAGCCAGTGAGCACTGTCTGGCATCCTTGTAGGAATTGTGGGAGGAAGTTTTCAAGAGATTATAATCGAGATGTCCATGAGAGGATTTGCAACTCTGTAAAGCCCTTGCAAAAAAACACCAGCAATTCTGGGAACTCAAACATCCATCCTTGCAGGAATTGTGGCAAGTACTTTACAAGGAGTGATAATCGGAATTTCCATGAGAAGACTTGCAACTCTGCCAAGCCCTTGCAAAAAAACACCATAGAAATTAGGACCAGTAGCAGGGACAAGTTGCAGCACAAATGCCCCCACTGTCCAAGCAAGTTCAAGTACAGAAGTTTTCTCCTGAGACATATTGGGTCACACACTGGAGAAAAATCATATCCATGCATGCACTGTGGTCACAGCTATGGAATCCAATCACGATGCTTACAGCATGAAGCTTTCTGTGATGGTGTTAATAGACAAAAGCCACCAAGCGCCAGCCTTGGTGAATATAAGTGCAATATCTGCACAAAAATCTTCATGAAATCCCGAAACTTAAGGCGGCACATCCTAACGCACACAGAGGTAAAGCCATATCGCTGTAAGGCCTGTGACAGCTGTTTCTCCAGACATGATCATCTAAAACTGCACCAGAGTCGCTGCAAAGGGAAAAGACAACGTTTAGAAGTTCGCATTGCCAAAATTAGTCTGGCAGATGTTGGAAGGGGCTGGCAAAATAACCTGAACATTACCGATTCAGGAAAGCAACAAGGGTTTGACTGCAGCATATGTTCAAAGATCTTCCCCTCTCACAGCATTATGGCCCGACATATTGCCATGTCACATGCTATAAGAACCGTCAGTTCATTTACTCATGAAAAATCCCTTAAGAGACATATAAACATTGGTGCATGTCAAAGATTTTACGCAAAAACAAAGCTTTCAGAAAAGCTAAATGTTACAAGCCCACCATCTAGAGAGACAAACCGACTTCTACAGAGGATCCAGCTGCAATATAAAGACAAACGCAAATTCAAATGTACCTTTTGCCCTCGCCTTTTCAAAAGTGGTGAGCAATTGAGGGTGCACACCCGCTTGCATACAGGGGAGAAACCTTTTGGATGTTCTAATTGTGGTGAAAGATTTATCCGTAGGGACTACCTGCAGCGCCATTTGAACAGGTGCAAAGGGGAACCTCTTGACAGAGTGCTTTGTGACAGATGTGGCGATGTATTTTCGCAAGACGAACTCGAGAACCATCAACTGACATGTGTTGTCAAGTGTAAATCACCTGCCCGTAGTCGAACTGAGTCCACTACTCGCAGTcccccaaaagggttctcctgtgcTAATTGCAGTGCCCGCTTCCTGCTGTTCTCACAGCTCCAGCAACACTTTCTCAACACGCATAGAGACACTCCAACAAATCAGGCTTCACCTCTACAGGAGCAGTTGTCTAGCATGGTGAACATAAAAGAGGAGCCTATGGATGAAGGATATGGTGACACTTGGCAGAATAGTGATAACAATCTCATGTTTGATCAAGACAGTGATCCAAACGATATGAACAAACCCATTAAATGTCCACAGTGCAACTTGCACTTTGGAAATAAGGGTGGATTTTCCAGACACATGCGTACACATTTAGGAGAGTACCCATTCAACTGCAAGAAATGCAATAAAGGCTTTTGGAACAACAACTTATGTCGGAAACATGTAAGGAAATGTAGACTTGTAAAGGTCACAAAGGAAGAAGTTAACACGGACTCTGTAATTACTTCAGAGCTGGATCCTACTCTTAAAGAGACTGTTCTAGTCTTCAACCAAGGTTACAAAACAACAGGCACTGGGGTTTTGCAGACTAATTTCTCCTGCAAAGATGACTTGAAGGATTTAACACTGCAGAATTCCTCTGGAAATCAAGGCAAAGGACAGTCTTCCCATGATAGAAGACATAGTGGTCAACAAGTCCCAGGCAACAAGTACCAGTGCTCAGAGTGCGATAGAAGTTTCACAGATGGGCTTCTGCTCATCAGCCATTTAGAGGACCATGGGCGTGAGGAGCTAGAAAGAAAAAAGAAATTTTGCCAGCCTTGTGGTAAGACGTTTGCTAATCCTTCAGACCTAGCAAGGCATATGAGAGGCCACTGGAATGAGAAGATATTTTCTTGCCCACAATGTCCACAGACTTTTCCCTGTCCTTCTGACCTTGACATCCATAGAACTTGTCATGACTCAAATAGACCATTTGTCTGCAAAGAGTGTCAACAAAGGTTTTGGACTAGTCAATCTTTAGAAAACCATCAAAGCCAAGCTCATTCAAAAGAACTAATTCATACATGCCATGTCTGTAACAAGAACTATTCAATCAGAAGTTCACTTGTTAAACATATTAGGATGAAGCATCAAACCCAGAAGAACATGGATGTTGTTTTCTACGTGAAGGAAAAGGAGACTGCAGTGCAAGAGAAATTTGACATGGACGTTGATGTGGATGGAGGAAGTAATGCAAGTAATGATGAAGATGAAAATGATGCTAATGAGGACAATGACTCTGACTCTGCAGACTACTTCCCCTGCCATGTCTGTGGGAAAACGTTCACCACATCAGAAAGCCTTGAGGATCACCAACGCTGTCACCTCGGTGAAAAACCTCATGAGTGTGCAGAATGTGGCAAATGTTTTTTCCAGGCAGGGCAACTGCAACAGCACCTTCGGAGCCACAAGTCTGAGTATCAGTGTCAAATATGTGGCAGAGGCTTTGTTTCACTCTTTGCCTTACGCAAACACAAGCATACTCATGGAAAGAGCCGTCAACACCGTTGCTCCAAGTGCCCGCTCAGCTTCACAGGGCCCTCGCAGCTGGCAGAGCACATGGGCACCCACCGCGATGACAATTTCCCTTGTGATATATGTGATAGCACATTCTCCTGCAAGATGAGTCGAGCAGAGCACCGGAAAATCCACACTGAGACAGAGGATATTCCACCAGAGAGGACTGCATCCCCCTCTCCTACTGCCTCTTCCTCTACAATGAAACACCTTCAATATCGTTGTGGGGTTTGTAATGAACGTTTCAAAGAACCAGAACAACTGTCTGAGCATGGGTGCATGGCTGCCAGAGAACGACCTTATTCATGCCATGAATGTAATAAGCATTTCTTGCAAGCGTCTCACTTAAATAAGCATGAGCTCAGTCACTACCAAATACCACAATCATACGTGTATCGGTGCAATCAGTGCCACATGAGTTTCAACTACCGTCACAATTTTGTCAGTCATTTAAATAAACACGGTGACGATGAGGCTGCAGCAGACGCTCTGAAAGGAGGCTCAGTGACAAATGCTTGGGAAactgtttcagagaagagaacaatTTACAAATGCCCAATTTGCCCTCACAGGTTTGCTCATGCCATAGAATTGGCAAGTCACCTTTCAATACACTCAGAGAACACGTTTGCTTGCAGTGTTTGCAAGTTGACATTTCCCAACAAAAGCAAGCTTGCTGAACATGAGCGGAGCCATCTGACTGCTGCAACACAATACGAGTGCACTGAGTGTGGTCAGAGCTTCTTGGGCAGTGATTTCCCCCAGCACCACTGTGCACGTCGGCAACATGCTGTTATAGACCATGAACACCCACATCTGTCTAATAGACAGTCAATGGAGGAGGAGCTGGATGTTGGGGAGGACTTCTTTAATTGTACTGTCTGCTTAATGCGATTCTCTTCTCGCGGTAGTCTCCAGCAGCATCTAAACAAAGAGCATCACAATGAACGGCCATTCAAGTGCCAGTCTTGTGGAAAGACCTTTGCTCTGAAGAGATATCTCAGAGACCATGAGCGAAGACAACATAAGTTTGGCACTGAACGAGCCGACCCGACATACAAAGCCACAGACAGTGAGAGCCAGTACAAGTGCTCAGTTTGCCCCAAAACATTAACCTCGGCACACGACCTGTCATTGCATATGAAAGTGCACACCGAACAGGAATCTGGAGGAGACCACCGTTGTGACATGTGCTACAAATCATTCAGTCGACTGTCTCTTCTCAGGCAGCATCAAGAAAGTCATGTTGGGCAAGTTGTATATGAATGCACAGAGTGTGACAAAGCGTTTGCTTTCCCACATCTTCTAGAGGAACATCAAATGTCTCATGCTGCTGGACCATAAGTATTTTCTCACCATCAAAAACCTCCCACTTAACTAAATGTAAAAAGACAAGCTTGACAATGGACATAGAAAAGACCTCCTGCCTCACTGATTGTGTTCAATTATCCAATGAACTCAGTAATGTCATagaatttctttttttttctggTGCTGTTTGCAGTCAACAAGCAATTTTGTGTTCACACTTCCATCTTAATTGTTTAAAGTTTTTGATTGGCTCACAAGATGCTTAACTGTGTTTTTACCCCATGTCTTCTCAAATGTTTGGCCTACAACCTGGTTCGTGAAAAGGTTTAGATTATATTTACAGATTTCCTCCTATTTTAACATTTTATATCTGGTCAGAACTGCAGTTCATTGATACTATTACCTTTCCATAGAGCACTAATTTGTAATAACCTCCATGTTCAATTGTATATAGTTGTTTAAATGTCTTATGTGCCCTGAATGCAATTATAAAAGTTTCAGTTCACATTACACAAAATGAAATGTAAGCTTTTTACAATGGAATAAATTCCTGACTCTGAAGAAGTGAAATGGGCTGTCATTGACAGTTTTAGGAATCCATATTGACcagtttctcttttttttttctgcTTGCTAATCCATTACTCTGCCTAACCTTCTAAACATATTATCACTTAGACTTTAATAATGACGTGGGGTACTTTTAGCCATGTATGATCCATGTAGCTCTTCTAAACATTTGAAACCTTTCCAAATCTAAAACCACAGCATTGTATATTATGTAAATATTACATGATCGTAAACCATTTAAGTATTTGACATGAAATTGACCATTGTTGTAAGCTATTAATTTTCCCTGTGTTAAACATTCTATCATTCATTCAAATGCCTTATATGTGTTTTGGATGTAGTAGTTCAAGGGCAACATTTGTTGACATTTTTTCCTTATTGGGTGTTACTTTTGTATGGATGGTGTTTCAATCAAAAGACattaataaacaaaataaaccaGTCAACTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142415 lncRNA downstream 17107 22889732 ~ 22889979 (-) True G123283
TU142413 lncRNA downstream 30013 22876235 ~ 22877073 (-) True G123281
TU142408 lncRNA downstream 43832 22860225 ~ 22863254 (-) True G123277
TU142372 lncRNA downstream 51955 22854889 ~ 22855131 (-) True G123242
TU142370 lncRNA downstream 60623 22845750 ~ 22846463 (-) True G123240
TU142487 lncRNA upstream 32572 22982342 ~ 22982609 (-) True G123337
TU142496 lncRNA upstream 43292 22993062 ~ 22993274 (-) True G123346
TU142498 lncRNA upstream 45209 22994979 ~ 22995225 (-) True G123348
TU142445 lncRNA upstream 52436 23002206 ~ 23003912 (-) False G123306
TU142444 lncRNA upstream 52571 23002341 ~ 23003912 (-) True G123306
XM_021624738.2 mRNA downstream 7566 22883978 ~ 22899520 (-) False im:7147486
XM_021624747.2 mRNA downstream 7566 22883978 ~ 22899520 (-) True im:7147486
XM_036942630.1 mRNA downstream 24150 22864942 ~ 22882936 (-) True LOC110538076
XM_036942635.1 mRNA downstream 24163 22864942 ~ 22882923 (-) False LOC110538076
XM_036942633.1 mRNA downstream 24455 22864942 ~ 22882631 (-) False LOC110538076
XM_021624811.2 mRNA upstream 3811 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
XM_021624985.2 mRNA upstream 18281 22968051 ~ 22971540 (-) True LOC110538268
XM_021624724.2 mRNA upstream 169612 23119382 ~ 23123886 (-) False LOC110538089
XM_021624700.2 mRNA upstream 169612 23119382 ~ 23126698 (-) False LOC110538089
XM_036942639.1 mRNA upstream 169612 23119382 ~ 23126698 (-) False LOC110538089
TU142062 other downstream 528926 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 749552 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 55216 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 235870 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 330409 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 954069 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1209397 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile