RNA id: TCONS_00002236


Basic Information

Item Value
RNA id TCONS_00002236
length 3071
RNA type mRNA
GC content 0.32
exon number 6
gene id XLOC_001362
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 37379063 ~ 37383741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGTTTGGGTGAGCGCACACTGTACTGTGTGTCATTGCATTATGTAAACATTCTTACTGTGGCACTCTCATTTTCTTGCATATTCCAGCTCTAGTTAATGTGCCCCCACAGTAATCGGAGTGTTGGCGAGCAGGAAGTGATGCCGCTACCTTAATTAAGAGCCAGCCTGTTAAATAGCCCTTTCTCTAGACACACCATTAAATCCAGTCTTTAGCTTTAACTGTAAACACTCTCTGTAAAGTACTCTTACATTCAGTCGATCGCCACTGCGCTCCTGGACTTTGCACTTTGGGATTAAAAGAAGAGCAAGGTaaggttttcaaacttttttttttaatcttttatattttataaaatctttaaaagtaataataaagctACTGAACAGTAATATAAACTTTATTCTTCATATTCAGAATGAAGTCTGCCCTATTGATTCTTTGTCTGTTGGGAGCAGCCTGTGCTAATCCAGTAAGTACTATATTGAATAACCTTTAAAAAGCAGCTCTTTCAGTTCTTTTTCAGcactttctttaaatattttctgCAGATCTTGCATAAAGTGGCTATGGAGATGATTCAACATGCATCTAACTCTGTAAGTGGCGCTCAggataaatgaaaatgttttgtttaaaaggtGTTTTAGGTATTGCTGTtgctataatatttatatattactgCTCTTATATTCAACAGTCGGAAAGCTCCTCAATATCTGAATCCTCAGACCAGAGTAATACCTCAGAACCTTCGGAAGAGAAGTCAGAGGAAAATGTTTCCGACAGCAATAGCTCTGAATCACTTGAATCTGAATCAGATGAACCGaTATCTAAAGAGAGTGAAAGCCATTCTGTGGAAAGTCTGATTGGAAAAAGCGAGACCGCACTGACAGCCGACAACACTCAAAGCAGTAAAGAGAACATCCGTAGGGGCTGGATCTACACCCTCAAATGGGTCCAACCAAACAACAACATTGTGCAACCAACCGGCCAGCCACATGAAAATGACATCCAGTCCACTAGTGACGCATCCCAAATAAGTGAGAGCAGCGAATCAAGCGAAAGCCAGGAAAAGGTTGTCGTGAACAAGATGCAAGTGGATAACAGTGACGACACCAGTGAAAGCGCTGAACACAATGGTGTTGTTGCTACTGAATACAGCAACagtaacagcagcagcagcagtagcagCAGTGAAAGCACCGAGTCTAAAGACAGCGGCACGGATAGTGAAAGTCGCTCCACTGAGTGTGTGCCTGGCGATGACAGTCAAGATTGTGAGAGCGAGGAAAACCTTCCTCAGGATATCGGTGATGATGGAGCAACCGACCCTTTCAATGGCTTCTTAATGCCTGATGTCGCTGAGCCCTAGCGGCAGTTTAAGACATCATTTATTATGACTCAATGCTCTGATAGCTGCAAGTTGGAAATCCCAGGAGCGTAGTAAAATGGGAATGTTCTCTTAAGGAAAATGTTTATAGGAGGGTATGTAAGGAAATttctataatattaatataaaatggtGAATAAgcattgttaattattttaaggtaacttggtctaaatcagtggttcacagaatgtttttttttttacttttaaaagataattttaattatgttcttaATCTTTAAACTTTTAATTACCAAACAGTCTTAGGATTTTAAGTGCAATGGTTTTGGCatagaaatataatacatttttttatcgtaacttttaaattatatagaagaaaaaatataataaatataatattaaattaattgcaaatttaaattgtgtataataaaataaataaatacattttaaaagaaaaggaAGCAAATTATTAGTATACTTTACATAAAAACTCATCTTCTAAATTAcgcaaacaaattataaaaaataaataagcttttcttGCATTGCACAAAATTATCAATTCTGTTTTTAAAACTTCTGTATTTAGAACTTAAAAATTGTCTAAAAGAACTGGGAACCACTGATTTACATCAACTtagtattaattaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatatacatacatacatacatacatacatatatacatatatacatacatacatacatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagttgaagtcagaattattagccccccaccctgaattttttgttttatttcggctagaataaaagcagtttttaatttttaaaaaccattttaggttAAAatgtttagcccctttaagctattttttcccaaTAGTCAACAGatcaaactatcattatacaataacttgcctaattaccataacctgcctaattaacctaatctaattaagcctttaaatgtcactttaagctgtaaagaagtgtcttgaaaaatatctagttaaaaattatgtactgtcatcatggcaaagataaaaaaaaaaaagttattaaaaattagttattaaactgttatgtttagaaatgtgtggaaaaaaattatttccgttaacaaaaaaaacagggctaataattcaggggggctaataattctgacttcaactgtgtgtgtgtgtatgtgtgtatgtgtgtgtatatatatatattattatatatttttttttattattgaatatctTTGGAGCTGAAGTTgtttgatgtattttttattattatttatatattttgtagtcatttatttatatgaattaaCCATTTTCAAATAAAGTCATTAAAAATAAGCCATTGGTTGCCGTTTGTTTTTCCCAGCCGTTCTTAAATGCCAAGAAGTTACAAACGCAAGCACTTCTACATTCCATCCTCAAATGAAAGGGTTGCCCAaatgtgatccaagagtaattaCCAACTTCATTGCCTATAATTTCACAGATTTACTTCATACCTCTGCAGAAGCATgcctaaacaataaaaaatgtgtatACACAGCTGAAATGGCTGTTGTGTGAAAAAGCACCTTCAGCTGTGTTCTTATTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090424-1 Is expressed in mandibular arch skeleton; odontoblast; and tooth pulp.

Ensembl:

ensembl_id ENSDART00000191887

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003446 lncRNA downstream 906241 36450821 ~ 36472822 (-) True XLOC_001357
TCONS_00003444 lncRNA downstream 906251 36424768 ~ 36472812 (-) False XLOC_001357
TCONS_00003443 lncRNA downstream 906251 36424768 ~ 36472812 (-) False XLOC_001357
TCONS_00003445 lncRNA downstream 906251 36450821 ~ 36472812 (-) False XLOC_001357
TCONS_00002968 lncRNA downstream 1022597 36355781 ~ 36356466 (-) True XLOC_001356
TCONS_00002244 lncRNA upstream 786943 38170684 ~ 38171652 (-) True XLOC_001364
TCONS_00003447 lncRNA upstream 792121 38175862 ~ 38190204 (-) True XLOC_001365
TCONS_00003448 lncRNA upstream 1267419 38651160 ~ 38709154 (-) False XLOC_001370
TCONS_00002255 lncRNA upstream 1281426 38665167 ~ 38709221 (-) False XLOC_001370
TCONS_00002254 lncRNA upstream 1281426 38665167 ~ 38756904 (-) True XLOC_001370
TCONS_00002234 mRNA downstream 1554 37372919 ~ 37377509 (-) True XLOC_001361
TCONS_00002231 mRNA downstream 291097 36935154 ~ 37087966 (-) False XLOC_001359
TCONS_00002232 mRNA downstream 291097 37082639 ~ 37087966 (-) True XLOC_001359
TCONS_00002230 mRNA downstream 378556 36935154 ~ 37000507 (-) False XLOC_001359
TCONS_00002229 mRNA downstream 607351 36770863 ~ 36771712 (-) True XLOC_001358
TCONS_00002239 mRNA upstream 313632 37697373 ~ 37701121 (-) False XLOC_001363
TCONS_00002240 mRNA upstream 313640 37697381 ~ 37701128 (-) True XLOC_001363
TCONS_00002241 mRNA upstream 785771 38169512 ~ 38171787 (-) False XLOC_001364
TCONS_00002242 mRNA upstream 786075 38169816 ~ 38171648 (-) False XLOC_001364
TCONS_00002243 mRNA upstream 786693 38170434 ~ 38170997 (-) False XLOC_001364
TCONS_00002233 other downstream 15073 37363872 ~ 37363990 (-) True XLOC_001360
TCONS_00002211 other downstream 2043647 35333000 ~ 35335416 (-) True XLOC_001346
TCONS_00002209 other downstream 2043893 35332924 ~ 35335170 (-) False XLOC_001346
TCONS_00002210 other downstream 2043970 35333000 ~ 35335093 (-) False XLOC_001346
TCONS_00002208 other downstream 2060854 35317354 ~ 35318209 (-) True XLOC_001345
TCONS_00002252 other upstream 1267419 38651160 ~ 38665973 (-) False XLOC_001370
TCONS_00002253 other upstream 1273886 38657627 ~ 38709154 (-) False XLOC_001370
TCONS_00002260 other upstream 1424948 38808689 ~ 38813418 (-) False XLOC_001371
TCONS_00002265 other upstream 1990061 39373802 ~ 39373911 (-) True XLOC_001373
TCONS_00002266 other upstream 2291965 39675706 ~ 39677920 (-) True XLOC_001374