RNA id: TCONS_00003446


Basic Information

Item Value
RNA id TCONS_00003446
length 1019
lncRNA type sense_over
GC content 0.41
exon number 3
gene id XLOC_001357
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36424768 ~ 36472822 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGAGAAAGACGTTCTTATGGAGTGATTGAATGTATGGAGATCTGGCGGTATTTTGAAAGTTTAAAAATGCGCTTCCAATTGCTTACAGAACAGCTTTTGAGTCGAATTAACTGAGTTTATGTGTCATATAAGTTCGTATATTGGCTAATATAGTGAGACAGCAGACGCTGAGAATACAAGGGATTCTTACTTTGGAGCCTGTTGGTCGGCGGTGGCTCCAAGcccagagagtgagagagagagctggCTGGCAGATGGCCCACTCATGAGCCTGTCTGTGGGGGCCGACTCAGTGGAGCTGCCCTGCCCCCTCCAGAAGTACCACTTCAAGGGTCAGTGCTTTGCTGAAAATGGGTCCTTTTCTTGGGGACTCATGTCCTCAGGCACTTGCTTGGCACCGGGTAAAAGAAGTGGCGACATACGTTCATGTAAGTGGGCCATAGTAGCAGATGGGACACTGATTGCTCTGTTGTTTACAGCTGTTTGTGTCCCTTCATGTGACTCAAACTAGCAGGAAAACAAGGCAATGTTGCACCCAAGTGCAAAAATTATTTGTGGCCCCCATTACGAATTGGGCCAAGTGCTCCAAACTGTAATGGACCTTTGGCAAAACGATCTCTTTCAATTGAAGATTGTTAGTGTGGCACTGCAGTAGATAGAATGACTGAAAATGGTTTAGAGTGAGTCTCAAAATCCATTTATGAACAAACCTTCTGCATCActccaaatgtttattaataattttcaaCAGCAAATAATCATGTTGACTGTGAATTTTTCCAAGGATATCATGATACCACATAATCTACATCTAAAAATATGCATGCTCAGAAAACACCAGAACAGTGTTGGATTTTGTTGACTTACATACTtaaattttcacaattttttgaagaatgttgaggtccagagaaataagcaattttaattGAACACTGAATTTGAGTTGAACcaaatttttaacattaaaaaaatgtatttgatttcaCGTTGTGTCATTCAAATTTACAGGCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002968 lncRNA downstream 94355 36355781 ~ 36356466 (-) True XLOC_001356
TCONS_00002967 lncRNA downstream 99333 36348693 ~ 36351488 (-) False XLOC_001355
TCONS_00002966 lncRNA downstream 99431 36349189 ~ 36351390 (-) True XLOC_001355
TCONS_00003442 lncRNA downstream 477038 35972620 ~ 35973783 (-) True XLOC_001352
TCONS_00003441 lncRNA downstream 494983 35953978 ~ 35955838 (-) True XLOC_001351
TCONS_00002244 lncRNA upstream 1697862 38170684 ~ 38171652 (-) True XLOC_001364
TCONS_00003447 lncRNA upstream 1703040 38175862 ~ 38190204 (-) True XLOC_001365
TCONS_00003448 lncRNA upstream 2178338 38651160 ~ 38709154 (-) False XLOC_001370
TCONS_00002255 lncRNA upstream 2192345 38665167 ~ 38709221 (-) False XLOC_001370
TCONS_00002254 lncRNA upstream 2192345 38665167 ~ 38756904 (-) True XLOC_001370
TCONS_00002225 mRNA downstream 232073 36188184 ~ 36218748 (-) True XLOC_001354
TCONS_00002223 mRNA downstream 298690 36022496 ~ 36152131 (-) False XLOC_001353
TCONS_00002224 mRNA downstream 298690 36027470 ~ 36152131 (-) True XLOC_001353
TCONS_00002222 mRNA downstream 299444 36017867 ~ 36151377 (-) False XLOC_001353
TCONS_00002221 mRNA downstream 521879 35897044 ~ 35928942 (-) True XLOC_001349
TCONS_00002227 mRNA upstream 273256 36746078 ~ 36772147 (-) False XLOC_001358
TCONS_00002228 mRNA upstream 273416 36746238 ~ 36770883 (-) False XLOC_001358
TCONS_00002229 mRNA upstream 298041 36770863 ~ 36771712 (-) True XLOC_001358
TCONS_00002230 mRNA upstream 462332 36935154 ~ 37000507 (-) False XLOC_001359
TCONS_00002231 mRNA upstream 462332 36935154 ~ 37087966 (-) False XLOC_001359
TCONS_00002211 other downstream 1115405 35333000 ~ 35335416 (-) True XLOC_001346
TCONS_00002209 other downstream 1115651 35332924 ~ 35335170 (-) False XLOC_001346
TCONS_00002210 other downstream 1115728 35333000 ~ 35335093 (-) False XLOC_001346
TCONS_00002208 other downstream 1132612 35317354 ~ 35318209 (-) True XLOC_001345
TCONS_00002204 other downstream 1703704 34746069 ~ 34747117 (-) True XLOC_001339
TCONS_00002233 other upstream 891050 37363872 ~ 37363990 (-) True XLOC_001360
TCONS_00002252 other upstream 2178338 38651160 ~ 38665973 (-) False XLOC_001370
TCONS_00002253 other upstream 2184805 38657627 ~ 38709154 (-) False XLOC_001370
TCONS_00002260 other upstream 2335867 38808689 ~ 38813418 (-) False XLOC_001371
TCONS_00002265 other upstream 2900980 39373802 ~ 39373911 (-) True XLOC_001373