RNA id: TU209365



Basic Information


Item Value
RNA id TU209365
length 330
lncRNA type intronic
GC content 0.42
exon number 1
gene id G184559
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75140743 ~ 75141072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTGGGAATGCTCGTTTCCAGTAAAGGTTTGAGAGGTCAGTTGCCAATGATAATGAACCTTTGAACTGGCTGCCCAGTTGTGCACTAAGATGGCCTCTAGTCTATTGTTATGGAGTGAAACTGGAGAaactgagagaaaaagagaggcacCATGACACCTGAGCTATCTGATTCCTAGATATAGTtaagacacagagagcgagatagtTACTTTCTATGTATGGGACCAGGCATTTAGAGGTGGTGTTATTTCCTGTTCGGTCCAGCAGATGGCAGACATGTAAAGACAAAGTTTATTGGGAgatactggcacacacacacacacacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209364 lncRNA downstream 239 75140270 ~ 75140504 (-) True G184558
TU209363 lncRNA downstream 537 75139957 ~ 75140206 (-) True G184557
TU209362 lncRNA downstream 2431 75137778 ~ 75138312 (-) True G184556
TU209361 lncRNA downstream 3593 75136594 ~ 75137150 (-) True G184555
TU209359 lncRNA downstream 4911 75135604 ~ 75135832 (-) True G184553
TU209366 lncRNA upstream 56 75141128 ~ 75141489 (-) True G184560
TU209367 lncRNA upstream 880 75141952 ~ 75145588 (-) True G184561
TU209428 lncRNA upstream 102756 75243828 ~ 75248515 (-) True G184615
TU209437 lncRNA upstream 113619 75254691 ~ 75256783 (-) True G184623
TU209477 lncRNA upstream 163467 75304539 ~ 75308405 (-) True G184663
XM_021571790.2 mRNA downstream 546317 74533285 ~ 74594426 (-) False LOC110496093
XR_005034539.1 mRNA downstream 632638 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 667427 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 667441 74452532 ~ 74473302 (-) False LOC110496063
XM_036955510.1 mRNA downstream 667443 74452532 ~ 74473300 (-) False LOC110496063
XM_021571925.2 mRNA upstream 215499 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 437778 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 443485 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 454294 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 454294 75595366 ~ 75607735 (-) False LOC110496186
TU208774 other downstream 408106 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1029952 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1147198 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 1464320 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1794896 73344950 ~ 73345847 (-) True G182708
TU210008 other upstream 465155 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 736287 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 844087 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 952098 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 1132452 76273524 ~ 76293392 (-) False G186197

Expression Profile