RNA id: XM_036973938.1


Basic Information

Item Value
RNA id XM_036973938.1
length 3163
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110519409
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34991023 ~ 35038369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatcttggcaaaggagaaatgctcactaacagggatataaacaaatttgtccattacattttagagaaataagctttttgtgcgtatggatcATTTCTGGGGTTCTTTTATTTacgctcatgaaacacgggaccaacactttacaagttgcatttatatttatgttcagtatacATGTCATGTCTCAAAATCGATATCTATCTTACCTCctatattgttttatgtcctctGGATTTGAGAAGAAAGATAAATTCAACAGTGAACCTGTCAGTTTGCCTTAGTTCTCGCACAgcatccagcctagctgacgCAATGCTATTTTCCAGATTTTTGACCACATTTCTTCTCTAGCCTCCGTTGAGTCACCCTAATCTTGGCCAACATACAAGAAGAGTGGACTATTGTGTCTTGAACTTAGTCAGTATTACTGGACATGAGGAAGCCAGTGCCACAAAAAGCTATTGAGTGGAAAGATGGCAGGCAGATCAAGCATGCCCGAAGTGGCCGTCCCTCCCGGGTCCCATCGCAGTACCAAGGAGGTCACTTCAGTTGGGACAAATACCTGAAGGAAACAGGTGCTAGTGCTGCACCTGCACACTGCTTCAGACAGGGCGCAACACCTCCAGTGAATGAGTTCAAGGCGGGCATGAAGCTGGAGGCGCAGGACCCTCGGAATACAACGTCCACCTGCATTGCTACGGTGGTGGGCCTGACTGGATCGCGGCTGCGCCTGCGCCTCGATGGCTCCGATAACAAGAATGACTTCTGGCGCCTGGTGGACTCGTCAGAGATCCAGCCTATCGGTAACTGCGAGAAGAACGCAGGCATGCTGCAGCCGCCAttggGCTTCCGTCTGAACGCATCCTCCTGGCCGATGTTCCTTCTAAAAACACTCAACGGAGCCGAAATGGCCCCAGCACGCATCTTTCACAAGCAGGAGCCCCCAGCCCCAGAGCAGAACTCCTTCCAGGTGGGCATGAAGCTGGAGGCGGTGGACCGCAAGAACCCCCACTTCATCTGTCCGGCCACGGTGGGGGCGCTGCGTGGCGTGGAGGTGCTGGTCACCTTCGACGGCTGGCGGGGTGCCTTCGACTACTACTGCCGCTACGACTCCCGGGACATCTTCCCCGTGGGCTGGTGCTCTCTCACCGGGGACAACCTGCAGCCGCCAGGCACCAAAGCAGTGCTACCCAAGACCCTCGGTTGCCTTTCCGACGGTAGTGAGGGAACAGCTATGCACCCCATGCCAGGACAGCCGCCTGGCCAACGGGGACGCAAGCCAGGCCGCAGGAAAGCCAAGCTGACAGGGCTATGGGGCCAGAAGGGGGCCGGAGTAGGAACACAAGCCCCCCTGCCCAGAAATGGACTGGAGCATatcaaggtccccaagaagagAGGCCCCAAACCGGGGAGTAAGTTGGGCTGGGCGAAGAGAGCAGGCTGGCTGGAGGGTGCCATGGCAAGCCCAGTGCGACCCATGTCCCGGCCCAGAGGGAGGCTGCCAGCCAACTGGGCCCAGAGGATGGCCCTGCAGGAGGGTCAAGTGGAGTCTACCAAGATCCCCAAAAAGAGAGGGCCCAAGCCCGGCAGCAAGAGAAAACCGCGGGTGGTGCCCAACCCCGTGCCCGTTTCCCCCAACAGCAGTATGCCAGAGCCAGACACCAGCACGGTGCCCCTGGACAACGCCATCATCCCCAGTGCCGCCTTGCATGCtgcaacagTGTGTGTATACCTGAACAAGTATGGGAAGGTGGGACCCCACTTGGACGGGCGGAGGGTGCAGCAGCTGCCCGACCACTTTGGTCCAGGCAGGGCTTCCTCGGTGCTACAGCAGTGTGTCCAGGCCTGTGTGGACTGTGCCCACAACCAGAGCTCTGTCTTCTCCTGCCTCAAGCCAGGTCACGGAGGAGAGGTCATATCAGCCCACTTTGACCAGCAGCACCATACCCTCACCCTGCCCACGGTCAACAGCGTCACGTACGTCCTGCGCTTCCTGGAGAAACTCTGTCACAACCTCTACTGTGACCCTCTGTTTGGCAGCCAGCCCGTTCCCCGAGGGGGCCTGCATTACGACAGCCACGCCCACCCAGAAAGGAGAAGTTTTAGGGAGGGCCTCACAACGGGTCCAGGAAGAGGCTCCAAGCGGTTCCTTCAAGACTCCTACTACAGCCCCCTCCCCCACAAGCTGGCCAAAAACCTTTGCCTTTCCTCGGAAGGTGAGTCCTTCCTCATGGTGAACGGTGTAGGGGGTTCGGGGCACTTAAAAAAGAGCCCCCTGTCCCCAGGCTCGACAGGGCAGCCTCTGGGCCTGCGGTCCCCCACCAAGTTGCTACATCTCAACTCTTCAGGCTCTGAGCGTTTCAGAGAGAGCCCTCGGCCCAGTGGCCAGGACCCCAACCTGTGGACGGTGAAGGACGTCATGCAGTTCATCAGAGACATAGACCCCCTACTGTCCCCCCACGCAGATCTCTTCAGAAAACACGAGATTGATGGCAAAGCCCTCTTGCTACTACGCAGCGACATGATGATGAAATACATGGGCTTGAAGCTCGGGCCTGCCCTAAAACTCACATTCCACATCGACAAGCTCAAACATGGACGCCCAAATTGAACTCATCAGCGTCccgtccccccctcccctctacagGATATAATGCACAGCATACTACTGGACTAACCATCACATGTCGCATCCGCCACTAGGCTATGATACCTGGTGTCATAtatcccctccctttctctgccGCATCTAAGAAGCCCTGTGGCGAACTTCtcttatttacattttatttctatTGTGTGGCACAATCCAGCCCTACGGCAGCATTGGATATGCAGACTGACTGACTCGCCCACAGCTCCTCCTCATCCATCATGTTACTTGCCTGTTTTTCTATTCCATATTCTCTTACAACAACCTCTACCAATGATGCCCTCCCTGTGTGTAGCCATTTTTTACTGAAATGGCCATTTTAGGACAGAGTTTGTATTACATTGTTTTTGATCACTTTTTTTTGTGCCTTCCCTGGAAAATATGGACTTGCATTAAGCCATTTTGGCTGTTTTGTATGAaataagtatactgaacaaaaatataaatgcaacatgtaaactgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttc

Function

GO: NA

KEGG:

id description
K11461 SCMH1; polycomb protein SCMH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285181 lncRNA upstream 10441 34968858 ~ 34982923 (+) True G250029
TU285168 lncRNA upstream 78017 34915098 ~ 34915347 (+) True G250016
TU285161 lncRNA upstream 84069 34908810 ~ 34909295 (+) True G250009
TU285140 lncRNA upstream 97900 34894997 ~ 34895464 (+) True G249988
TU285105 lncRNA upstream 112098 34880935 ~ 34881266 (+) True G249953
TU285328 lncRNA downstream 7777 35046146 ~ 35046501 (+) True G250150
TU285336 lncRNA downstream 21157 35059526 ~ 35059740 (+) True G250158
TU285337 lncRNA downstream 21430 35059799 ~ 35060015 (+) True G250159
TU285338 lncRNA downstream 21886 35060255 ~ 35060482 (+) True G250160
TU285600 lncRNA downstream 222841 35261210 ~ 35261419 (+) True G250398
LOC110504041 mRNA upstream 317389 34671886 ~ 34675975 (+) False LOC110504041
XR_005039848.1 mRNA upstream 326510 34665596 ~ 34666854 (+) True LOC118944510
LOC118964383 mRNA upstream 408873 34584351 ~ 34584491 (+) True LOC118964383
XM_021596477.2 mRNA upstream 521769 34458503 ~ 34471595 (+) False LOC110519336
XM_021596594.2 mRNA downstream 81337 35119706 ~ 35153002 (+) True ctps1b
XM_021596601.2 mRNA downstream 115177 35153546 ~ 35170264 (+) False rab42b
XM_036973943.1 mRNA downstream 165278 35203647 ~ 35221874 (+) False LOC110519579
XM_036973944.1 mRNA downstream 165306 35203675 ~ 35221874 (+) False LOC110519579
XM_036973945.1 mRNA downstream 219726 35258095 ~ 35611096 (+) False ptprub
TU284433 other upstream 572752 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 690457 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 980307 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 1015529 33974476 ~ 33977835 (+) True G248794
TU283768 other upstream 1158089 33828220 ~ 33835275 (+) True G248750
TU285376 other downstream 115333 35153702 ~ 35173463 (+) True rab42b
TU285526 other downstream 181463 35219832 ~ 35221372 (+) True LOC110519579
TU287065 other downstream 1473205 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 1585241 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 2688579 37726948 ~ 37727338 (+) True G253299

Expression Profile