RNA id: XM_021596935.2


Basic Information

Item Value
RNA id XM_021596935.2
length 3088
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110519995
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43857089 ~ 43875820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTCCTGAATAGGGGGGTGGGGTGCGCACGGGGGGAGGTGGATTTGGGGATGTTCTTTGTGTGTCccgtataaaaaaaaaatgttgtaacCGCGACGGAGGAGAGACAGTCACATGCATATATCCAATCCCATGGTGTAACTAGTGAGACGTTTGTATTTTGtggtgagaaagagggaaaagtGTTTCGAACACAGGCTGAATTCAAAGAATTGAGAAACGCAGTCGGCTTCAAGATCTGAaagtctctctccccccaccccggAGGCACCATGAGCTGGAGTTTCCTGACGCGTCTCCTGGACGAGATCTCCAACCACTCTACCTTTGTGGGCAAGATCTGGCTCACACTGCTTATCGTCTTCCGCATTGTGTTGACTGCTGTGGGAGGCGAGTCCATCTACTACGATGAACAGAGCAAGTTTGTGTGCAATACCCACCAACCCGGTTGCGAGAATGTGTGCTACGACGCCTTTGCACCACTCTCGCACATCCGCTTCTGGGTGTTCCAGGTGATCATGATCACCACCCCCACTATTCTGTACCTGGGCTTCGCCATGCACAAAATCGCTCGCATGGACGACGATGAGTACAAGCCCCGCGGGAAGAGGATGCCGATGGTCAGCCTAGGGACCAACCGGAACTACGAGGAGGCGGAGGACAATGGCGAGGAGGACCCCATGATCTCCGAGGAGATCGAgttggagaagaaggagaagccTAGCAAGAAGCACGATGGACGCCGGCGCATCAAGCGCGACGGCCTCATGAAGGTGTACGTGTTCCAGCTGCTGTCACGGGCTGCTTTCGAGGTCTCCTTTCTGTTCGGCCAGTACATTCTCTACGGCCTGGAGGTGTCTCCCTCGTACGTGTGCATGCGCTCGCCCTGCCCACACACAGTGGACTGCTTCGTGTCGCGTCCCACGGAGAAAACCATCTTCCTGTTCATTATGTATGCGGTGAGTGCCCTCTGTCTGCTTTTCACTGTGCTGGAGATCCTCCACCTGGGTTATAGCGGCATACGGGACTGTTTCTGCCGCCCTCGTCCTCGCCCCCCAACCCCCCACCAACTGGCCAGCCAGCATCCCTCACAATGTGGCCGCCAGGTGCCCACAGCTCCTCCAGGCTACAACACAGTGCTGAAGAAGGACCCAAAAGGTATGCGATTGGATTACAACCTGGGCGACTCGGGCCGTGAGTCGTTTGGGGACGAGGCGTCGCAGCGGGAGCTGGAGAGGCTAAGGCGGCACCTAAAGCTGGCCCAGCAGCACCTGGACCTGGCCTACCAGAATGAGGACAACAGCAGCACTTCGAGGAGCAACAGCCCTGAGTCCAACGGGACGGCCGTGGAGCAGAACCGCCTCAACTTTGCCCAGGAGAAGCAAAGCAGCACCTGCGAGAAAGGTTTACGAGCATAACTTTGTCATTGGCCCACCTGGCCCTCTCAGGATAAATTCTTGCATCTGGGACAGTAGGGGTACCAGGGAGCATTGTGTGGGGACAGGTGTGTATGTGACTTGAGGAGGATGAATCCATCTTTCTTTCAGTGTTGAGTCCAGTGAACGTTCAAGGGAAACATGCCAAACTTAACGAGCAGCGCCTTCCTACCCAGCTATACTTGAGCACATCTGAAGATCCAAAGTGTCCACAAACTAGTTTTCAGAACATTCCTATTCGTCTCAGGGTAGCTGtgctgtttttttgggggggaatacTAGTGTTTCCTCTTGTTTGTAGTTTTTCCCTCTGCTGGAGTTTAGAGGTCAATCTTAAGTTTGCCTTCAACCTAAAACTGGAGTTTACATTTCAGCCATTCTAAGGTATGGGCAACCCAAGCGTGTCGCAAAAACATGTCAATGTGTAatttttttatgtgtgtgttttgtgaggaATAGGGAACCACGGTGAGTCGGTGTTTGGGGATGTTAACTGGTATGGTAATAGTTGTGTTAGAAGTGATATTATGGAGTGAATAACTGTCTTCCATGTGCAACAGCTTACAATGAGCAAATGGGTAACTATTTTGGGTCAACCACCAGAAACAACAGTTACATTTGAGTTGTAGCACAGCAATATGTAGTTTGCAGAAAGAGAACTAACCTGCTTTCATCATGAACCTCCCCCTTCCCATAAATCTGACTGTTGCCAAGTCTGGGAACTGGAAGCCTATTTTGGCACCTTTGTCcaaaggatttaaaaaaaaccTGGGTAATGCTTGAATTCATGTAAATTGTTATCTTGTCTGGTAATGTTAAACATGCTTTTGATACTGATTTCTTCCATTTTGTTAGTTTAACATGGAAAGTGTTTGGACGACATTGCAAGATTAAACCTTTAAGGTCAGGATGGCCAAATTGTAACTATGAAGTTTACTGTTGTCTTTTTGGGATTTCTACATTAACTGAGGGACTCAACAGATTGGGAGTTATTTTCCATATTGAGGACCATCCACGATTTGTGGGTAACGCATCTATGCCATACACCAGTTGAACTCTGGGTcttgttcagtagggcacaacATAGCAATGTTTTGAAAGGGAAAATGTAATTAATCTTTCTTATAGGATAAGGTCCTGTTTTGTGCCTACTGAACATGAACCAGAGACccaagatttaaaaaaatatatatacaaacaaCGCATTTACTCTGTCGAATAGCATTTTCAGAAAGTAATTCAAGACCCCCACAATTCAGGGTTATTTTTctatattgttttgttcagtgttttctCCTGAAATTAGGACATGTAGATTTGTGGCTCTGTGTTACTTCTCTATGCAATTCAAAATGTATGCTCGGTTCAGTGTTCATTATTGAGGCATTGATGCAAGTAACATTCAAAAGCCTTCAAGCTGTTAATAATGACCCCCATGCGGCAGTCTCGGTGACTGTTGTAAATGTTATCATTGTTATCTTTTTATGGTTGAAACGACCCAATGCCTTGAATGTGATCTTATGCCATCAGTGCACACATTATATCAGCAGTGCCATTAAGTGTCAACTGTCATCTCAAACAATTTGTTTAAATACTTTTGTATGAATAGTATTTTTGTGCTCAATTTCTTAAATAAACTTTTCCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297189 lncRNA upstream 13694 43840940 ~ 43843576 (+) True G261217
TU297187 lncRNA upstream 26777 43830170 ~ 43830493 (+) True G261215
TU297185 lncRNA upstream 27863 43829183 ~ 43829407 (+) True G261213
TU297184 lncRNA upstream 28115 43828863 ~ 43829155 (+) True G261212
TU297179 lncRNA upstream 29614 43827208 ~ 43827656 (+) True G261207
TU297241 lncRNA downstream 20020 43895840 ~ 43897118 (+) True G261268
TU297242 lncRNA downstream 21527 43897347 ~ 43897554 (+) True G261269
TU297245 lncRNA downstream 23847 43899667 ~ 43899875 (+) True G261272
TU297247 lncRNA downstream 25088 43900908 ~ 43901187 (+) True G261274
TU297250 lncRNA downstream 28682 43904502 ~ 43904875 (+) True G261277
XM_021596934.2 mRNA upstream 11641 43830961 ~ 43845629 (+) True LOC110519994
XM_036974136.1 mRNA upstream 343383 43169785 ~ 43513887 (+) False LOC110519984
XM_036974137.1 mRNA upstream 343383 43305863 ~ 43513887 (+) True LOC110519984
XM_036974135.1 mRNA upstream 773510 43051602 ~ 43083760 (+) True LOC110519989
XM_021596932.2 mRNA upstream 912673 42895618 ~ 42944597 (+) True LOC110519992
XM_021596938.2 mRNA downstream 444 43876264 ~ 43895648 (+) True LOC110519997
XR_005045715.1 mRNA downstream 67304 43943124 ~ 43986958 (+) True LOC118956122
XM_036974177.1 mRNA downstream 200002 44075822 ~ 44191656 (+) False LOC110504116
XM_036974162.1 mRNA downstream 200004 44075824 ~ 44208105 (+) False LOC110504116
XM_036974170.1 mRNA downstream 200004 44075824 ~ 44208105 (+) False LOC110504116
TU292451 other upstream 3405090 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 3405090 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 4189182 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 5012714 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 5256404 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 376249 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 644599 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 1963101 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 2058299 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 2199664 46075484 ~ 46079425 (+) True G263733

Expression Profile