RNA id: XR_005051414.1


Basic Information

Item Value
RNA id XR_005051414.1
length 55
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118964364
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44834511 ~ 44834565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaatttgctcttttagtatttctccagtaggcTTCCTCAGAGAGAAAGCCccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298039 lncRNA upstream 318027 44516200 ~ 44516484 (+) True G262035
TU298032 lncRNA upstream 326420 44507752 ~ 44508091 (+) True G262028
TU298028 lncRNA upstream 333914 44500343 ~ 44500597 (+) True G262024
TU298020 lncRNA upstream 342529 44491656 ~ 44491982 (+) True G262016
TU297974 lncRNA upstream 411427 44422491 ~ 44423084 (+) True G261972
TU298275 lncRNA downstream 16814 44851379 ~ 44892059 (+) True G262259
TU298341 lncRNA downstream 124122 44958687 ~ 44959175 (+) True G262313
TU298803 lncRNA downstream 265474 45100039 ~ 45102438 (+) True G262735
TU298877 lncRNA downstream 363785 45198350 ~ 45198602 (+) True G262807
TU298884 lncRNA downstream 392608 45227173 ~ 45227384 (+) True G262814
XM_021596952.2 mRNA upstream 359239 44470171 ~ 44475272 (+) False LOC110520002
XM_021596954.2 mRNA upstream 359239 44470245 ~ 44475272 (+) True LOC110520002
XM_036974162.1 mRNA upstream 626406 44075824 ~ 44208105 (+) False LOC110504116
XM_036974170.1 mRNA upstream 626406 44075824 ~ 44208105 (+) False LOC110504116
XM_036974177.1 mRNA upstream 642855 44075822 ~ 44191656 (+) False LOC110504116
NM_001124435.1 mRNA downstream 44095 44878660 ~ 44903676 (+) True cd18
XM_021596956.2 mRNA downstream 69469 44904034 ~ 44930884 (+) False LOC110520005
XM_021596959.2 mRNA downstream 69913 44904478 ~ 44930884 (+) False LOC110520005
XM_021596957.2 mRNA downstream 69947 44904512 ~ 44930884 (+) False LOC110520005
XM_021596958.2 mRNA downstream 74009 44908574 ~ 44930884 (+) True LOC110520005
TU298041 other upstream 309103 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 581960 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 4382331 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 4382331 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5166423 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 1004356 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 1099554 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 1240919 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 1349569 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1996443 46831008 ~ 46832134 (+) False LOC110520046