RNA id: TU329700


Basic Information

Item Value
RNA id TU329700
length 2077
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC110504559
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68942535 ~ 69172271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACCAGGGACTCTCCTCCAGCTCAGAACCCAGAGAGGGAGCCTCATCATTGGGCTAGATCTGTGCCTATGTGCAGAACAGTGTGTATACCCCCCTGTGCATATCCTCTGTTGAATCTCACTGGTCTGGTGTTCAGAACAGTCACCATCTCTAGGACCAGGAAGTTTTCCAGATCATGTGATCTGAGCAGGTAAAACTCCTGTCTAGTCCTCTGAACTCCTTCAGGTATCAGCTACCGCTTTAGCCTCGCACAGGCAACTAGGTGCTTCAGGTGCTTCTGTAACCCTGGCAACAATAGATCAGAGGTCAAGGAAACCCCAAGGTGCACTTCTTTCACCCCCTGCTAGCCACCAGCCTTTCGCTTTAGCACAAAACTGTATGGAAGAGCCACCCAAACACCATACTGAGTGCAGATATGTACTGCCCCCACCGGCCCAGTGATGGATACTAATCCCAGAAAACACGCTAAAAGTATTACTGACTAGACAACACTAAATCAAAGCTGTTTTGACAACGCCATTGGTCAGATTGTATCAATGTTCTGTAAGGTTTTTACTGGCCTTAGTGCCATATAACAGGAGGCCAGTCAAACTCAGCTACAGATAATGTATTTTACTGATGAGTTAATAAAGCACACAAACAGACTGAATAGGGAACAGTGTAGATGACCAACACACAACTATCTCTGGCAGTCCCTCAATGTACTTCTTATCTAGATTTATTTTACAAACATCTCATAGAAATAAACTGTACTTTCTTCATATTAGTGTCCCATTTGCACCTGAATCGTTTGATGTGTTACATCTTATGTAAAACAATGTTAGGAGTCTACAAGTTTCTGTAGAATTCAAGGCTGCAACTCAAGCACAACTGAGTTCTCAAGTAAAGCTACCCTCAACCTCCTCATTCCCCCACCCTGTCTCCTCATTACCCTCCCAACCTCCATAATATCCCATCACCGCCTCCAGGATGCTGTAGGGGTTAGAGGGCGTTGCCAGGGTAACCTCCCTGTGAATAATGGCTGACGTTTAATGTGGTTTTGACTAGATGAGCTACAGCATATGTCAGAATAGACTTTTCATAGCGGGTTAAAAGAAtgtacgcagcaggttaggataattaggttgttaggaaaagggttagagttagctaAAATGCTGTATCCCATCTAGCCATGACCATTTAATgtccaaatgttttatttactatagcagaagagcacaGAAATggaaagatggaaagagaaaATTGTCTATATGGAAGATAGTTTCATGCAATGACTGAGGCAAAGAGCAGAGGTTCATTTTATAATGTGAATACCTTTTTTTGCCACATGATTGCCTATTGATATGAAACTTCTTTAAACTGTATTTatcttgtgtgtttgtttgtttccctGTGACTCCATTGTAAAACTGTTGTCAATTTTCTCATGTCAGAAATACTGATGTTTCCTATCATTTATTTGTCTGATTGTTGTTAGGATGTTAAATTGCACAATATCGATGTGTGGAGTGGTGTCCACATCATAAAAAAGTAGCTAAAAAATTGCCTTTAACCACTGATATAGGATCAAATATTTTCAACATCCCCctaatggttatggttaggattgaGAGAatggtaatctgatcctagatctgtggtaagGGGCACCTAACACTGGCCATGGTAAATTGGATGGGTGTGTCTGTGCAAGCCATTTGATCATAGAAGATTGATGTGACTGTAAAACCCAGGAAGTAGCTCTGATTGTTTTCTCATGTACACTGATCATCCTCCTTTAATAGGAATTAGCAACGCCATCACAAGCTCTATATTGGTTGTTGacacacacacacaccatatcctCAATGTGTGTCATATCCTCAATGTCTGCCATTTTTCATTCATGGTCAGATATCCCTTTATCATAATGTTCCTAGATCAGATGTCTGGTGCTACAACCAGTGCAGAATGGGCATTGTGCTGTTCACAGTCCATGTACAGTATTCCAATGACACTGTATATTTTAGTACATGGGCATATCACTGCCTTGTTGTaatggttgttgttgttttcctgtctcttccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329840 lncRNA upstream 3157 69161065 ~ 69161266 (+) True G290871
TU329839 lncRNA upstream 4642 69159577 ~ 69159781 (+) True G290870
TU329837 lncRNA upstream 10708 69153507 ~ 69153715 (+) True G290868
TU329836 lncRNA upstream 11473 69152563 ~ 69152950 (+) True G290867
TU329701 lncRNA upstream 36060 69128051 ~ 69128363 (+) False LOC110504559
TU329878 lncRNA downstream 68256 69240527 ~ 69241556 (+) False G290909
TU329880 lncRNA downstream 68256 69240527 ~ 69241253 (+) True G290909
TU329891 lncRNA downstream 83088 69255359 ~ 69255583 (+) True G290919
TU329892 lncRNA downstream 83680 69255951 ~ 69256215 (+) True G290920
TU329893 lncRNA downstream 84339 69256610 ~ 69256850 (+) True G290921
XM_036965140.1 mRNA upstream 305686 68854772 ~ 68858737 (+) False LOC110504548
XM_021597815.2 mRNA upstream 314108 68846508 ~ 68850315 (+) True LOC110520472
XM_036975022.1 mRNA upstream 798941 68324426 ~ 68365482 (+) True LOC110504539
XR_005051363.1 mRNA upstream 827108 68334244 ~ 68337315 (+) True LOC118964318
XM_036975021.1 mRNA upstream 886008 68261414 ~ 68278415 (+) True si:ch73-390b10.2
XM_036975025.1 mRNA downstream 297505 69469776 ~ 69595798 (+) False LOC110520475
XM_036975026.1 mRNA downstream 297505 69469776 ~ 69595798 (+) True LOC110520475
XM_036975029.1 mRNA downstream 453484 69625755 ~ 69634272 (+) False LOC110520478
XM_036975030.1 mRNA downstream 453488 69625759 ~ 69634272 (+) False LOC110520478
XM_021597823.2 mRNA downstream 453490 69625761 ~ 69634272 (+) False LOC110520478
TU328723 other upstream 939117 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 1402000 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 1482301 67678862 ~ 67682122 (+) False G289486
TU328193 other upstream 1532213 67625353 ~ 67632210 (+) False G289455
TU330151 other downstream 454072 69626343 ~ 69630369 (+) True LOC110520478
TU330321 other downstream 523124 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 689789 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 746911 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 777396 69949667 ~ 69952168 (+) True G291461

Expression Profile