RNA id: TCONS_00029014


Basic Information

Item Value
RNA id TCONS_00029014
length 783
lncRNA type retained_intron
GC content 0.43
exon number 6
gene id XLOC_014682
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18310386 ~ 18313381 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATTATTgcttaaaaagagagagagaaagagagagagaaaaaaagaatgtTACAGAAAAAGCTATTGTAAAAGTAATTATAGAAACGAACGTAGACCGTTTTGTTAAAATAATGAACACTGAGGTAATGAAGAGAGAAGACGTTGTACCGCGAGTGCAGCTGTTCAACTGCGTTTATGCTGAATGTGGAGCTACATTTACTCGTCAATGGCGTTTGCAAGAGCACGAGACCGTGCACACTGGTGTGATGTTGTATTTTCTTTTGCTGCATTGAGtacgcgctctctctctctctctctctctctgtgtgtgtgcgtgtgcgtgtgcgtgcgcgcgtTCCCTTCAGCGACCTTACAAGTGTGGTGTTGTGGGATGTGGACGCAGTTTCACTCGTAAATCGCATCTGAATCGCCATACTTCAGCACACAGTGGAGTGAAACACTTCAAgtgtaatatcaCTGCATGTGGCAAAAAATTCCAAGCTGCTGATAAACTTAAGAGACATGTGCGTTATGTGCACAGTGAAAATGAAGAATATTTCAAGTGTACAGAACCCCAGTGCTCTAAGGCATTCAGGAAACGACGTGCATTAAAACTGCACCTAGCAACTCATGGTACTTCAAGTTTCAGATGCTCAAAAAACAACTGTGGAAAGAAATTTGACTCTCACATTGCACGGAATGCTCATGATCGGAGACATTTAGgTTATCGGTGTCTTCGCACAGAATGCCCCATCACTGTACACACCTGGGGGAGTTTAATCAAACACATGGCAAGTCACC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6124 Predicted to enable metal ion binding activity. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000158321

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029772 lncRNA downstream 171618 18137714 ~ 18139894 (-) True XLOC_014680
TCONS_00030193 lncRNA downstream 172122 18137714 ~ 18139390 (-) False XLOC_014680
TCONS_00029000 lncRNA downstream 338782 17951658 ~ 17972730 (-) False XLOC_014677
TCONS_00028994 lncRNA downstream 476687 17834204 ~ 17834825 (-) False XLOC_014677
TCONS_00030192 lncRNA downstream 956779 17353644 ~ 17354733 (-) True XLOC_014673
TCONS_00029015 lncRNA upstream 1028 18314328 ~ 18315321 (-) True XLOC_014683
TCONS_00029016 lncRNA upstream 50017 18363317 ~ 18364965 (-) True XLOC_014684
TCONS_00029019 lncRNA upstream 104303 18417603 ~ 18418401 (-) True XLOC_014685
TCONS_00029022 lncRNA upstream 171406 18484706 ~ 18485881 (-) True XLOC_014687
TCONS_00029023 lncRNA upstream 283486 18596786 ~ 18597326 (-) True XLOC_014688
TCONS_00029010 mRNA downstream 158570 18144827 ~ 18152942 (-) True XLOC_014681
TCONS_00029009 mRNA downstream 159105 18143593 ~ 18152407 (-) False XLOC_014681
TCONS_00029008 mRNA downstream 159105 18143593 ~ 18152407 (-) False XLOC_014681
TCONS_00029006 mRNA downstream 175102 18131512 ~ 18136410 (-) False XLOC_014679
TCONS_00029007 mRNA downstream 175788 18132605 ~ 18135724 (-) True XLOC_014679
TCONS_00029017 mRNA upstream 103793 18417093 ~ 18418763 (-) False XLOC_014685
TCONS_00029020 mRNA upstream 110078 18423378 ~ 18492557 (-) False XLOC_014686
TCONS_00029021 mRNA upstream 163755 18477055 ~ 18492522 (-) True XLOC_014686
TCONS_00029024 mRNA upstream 304308 18617608 ~ 18627025 (-) False XLOC_014689
TCONS_00029025 mRNA upstream 304456 18617756 ~ 18626952 (-) False XLOC_014689
TCONS_00028989 other downstream 653339 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other downstream 784777 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00028976 other downstream 1100777 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028972 other downstream 1311770 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028964 other downstream 2282069 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00029018 other upstream 103881 18417181 ~ 18418763 (-) False XLOC_014685
TCONS_00029036 other upstream 521427 18834727 ~ 18834857 (-) True XLOC_014693
TCONS_00029037 other upstream 525111 18838411 ~ 18838541 (-) True XLOC_014694
TCONS_00029038 other upstream 528113 18841413 ~ 18841543 (-) True XLOC_014695
TCONS_00029041 other upstream 540757 18854057 ~ 18855476 (-) True XLOC_014696

Expression Profile

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