XLOC_014693


Basic Information

Item Value
gene id XLOC_014693
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18832068 ~ 18844413 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030196
AGGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTCAATAATGGCTTGAGGAATTGTTTTGGTGAACACTTTCTCACTTTCTGTGAATGGAGGCTAACATTTTGTACAGTTTATCTGCGGGGTCAGAAGCTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg
>TCONS_00029773
TAAGAGTTTCACCGTGTTTTAAAAGatcttttgttttaaaagattACTTCTAGCTCTTTTGAACTGACTGTTCTACAAATTGTTCACTTTCTCTTATTTAAGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCTTTCCAGTAGAGGAGTCTGAACGTAGTGTTTACACACACCGTAAAGAGATTGAggtaaatatttctttttttttgttgcactTTACATAAGAAGCGAGACTAGAGTCACATCCTGACGTTGCTCGTTGTCTTGGTGTGCTATAGTACTCGCAGAATAACCTCTCTGCTTATTCATTGGCTGCTGCTTTCCATTGCCCAGCCAATCACCAGCTCTGAAACATGCTAGATTTATGTAACCCTTCATGTACAAACCTTTTCAGATTTGATGCAGTTGGTTGAACCGCCATAAAGTTTTgagttaaagttttgtttttattcatatttgacTTTTTTGCATGTTTAGAcctgtcacatgattcttcagaaattttaattttctgcaataaaaaaactgactattttaatactttttttttttttttttgcaatcaaaATGGTTGAGGTcattataaaataatcaaattttaaGGTCTAGTAGTGTCTGCACTCCATTCAAAAACAACCTCAAATATATtgtcagacattctgtgaaaccATCCAAAATATCTTTGGGTGACAAGTCCACCGTTGCCTCTTAGAAGAAGGCCAGGTTGATCTTTGCGTGACATTGTTACTGTCTGTCAGCAGCAGATTGGCATGCTGCATGTGAACGTGTTGATGTATCCATCTGTGCACATAATTTGCAGATGTATAAATTGACGTGTATTGTTTGGACtgcctattttaaattattttttaaattttttttaaatgaatttaatttggaTAATTTTATGTTAGACAGTACTTTtgcaatgtgatgaagacttttTCAATCAGCACAACAAAATGTTTCTGAATGCTATCACCTATTCCAGATACTTGCTTTTTTAGCAGTTGGgcattttaaaggtgcagtgaaTATGTATTAAATAGTGTTTTTTCCAAATAAAGGGACACAAGCTGCACTTTTAAAAGCAAagcaatttcatttattttaatacaataagTGCACTaggttttattttactgtaatgcAAAAAAATTAGCATATAAAACATTTCTCTAAAAtgttgagagggtgctcgctgcagagctgagctccagcgagggggagcatgagctctcgctctgcctcctgtaagctgttttaatgcgtacaccaaccccacccttaaccctacccccagtgacatcactcgtagaagaagtgcaaaaaaggtggagctcaagctcccccctcgctggagctcagctcgcccaaatggctctgcagcgagcaccacttgaaaatGTTTGCACTTACCCAAGTCGCATActaagtaaaacatttttaaatatcaaatcaatgcatacaaaaaaagtgtatatatttgaTTAGTTAATAGGaaataaaatggctttaaaactgcATGGATTAAGGTTCTCTGTTGCCACGATGGATTTATGTTAATTGCAGCAAGTCAATTAACTGTTGCCATTTAATCTAATTGTAACTGATTTCCGTTAATTGCTGGGTTCCTGCCTGTCCTTGTAAGTAATTTATTTTAGCTTGATCAGATTTTGAAATAAGGATGTGTTTTGTTGTCCGCCTGCTTTTTGGGATGTGATCAAAGCCTGAAGTGGAGCAAAAGCACATTGTTTTTTCTACCAAGAATTTAGTGTCATTTCTGGTTTTTCCATTCCCGCTCATGGGACAAACTCGCTCTGTCCATTCCCTTGTAAaagtaatttcatttattttcgaTTACATGAACGTCTAAACGTCTATAATACTATATTTGTTAATTTAGGAACGATTCATCATGTTCAATAATTAAAATTGGACATATCGGTGTATGACGGTGTGCATCTTCTGTTAATGGTGTTCTGTGTAAGCTTTTGAATCGACTAATGCATAAAAATACCACTTTTTTGCAGATATATTAAACTGGTTTGTTaatatacttatttaaaaatggctATTAAAATGCTGGCTATTAACTGGTTATGTGGTTTAAAACCAtctcattaaattttttttttttttttttttttttttttttttttttaaagaatgttaccTGAAttataaatttttcattttaatccATGAAACTGACTTTAAGTTTTTCCCCCCTGTCGTTTCTGTAAGGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGTGAGCGCATTGACAGGCTGAGGAATGTTTATATTCTACTATACGTTGTGCATGATGTTTCAAATTTTTCATGTTGCTCTTCACTTTATGTGCTGTAGTTCTAGGAGAAAATCACTGCTTATTCATTGCCTGCTACTTTGATTCATTGTAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTCAATAATGGCTTGAGGAATTGTTTTGGTGAACACTTTCTCACTTTCTGTGAATGGAGGCTAACATTTTGTACAGTTTATCTGCGGGGTCAGAAGCTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg
>TCONS_00030197
CGCGGAAACCGAATGGTCTTTTCGACTTGGTTCAGAGGAGCACGCGGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCATTTCAGTTGAGGAGTCTGAACATGGTGTCAAACAAAAGCTAAAGAGATATAGATGCAGAATGAATCTTTCCAGTAGAGGAGTCTGAACGTAGTGTTTACACACACCGTAAAGAGATTGAgGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGACTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg
>TCONS_00030199
CGCGGAAACCGAATGGTCTTTTCGACTTGGTTCAGAGGAGCACGCGGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCATTTCAGTTGAGGAGTCTGAACATGGTGTCAAACAAAAGCTAAAGAGATATAGGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTCAATAATGGCTTGAGGAATTGTTTTGGTGAACACTTTCTCACTTTCTGTGAATGGAGGCTAACATTTTGTACAGTTTATCTGCGGGGTCAGAAGCTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg
>TCONS_00030198
CGCGGAAACCGAATGGTCTTTTCGACTTGGTTCAGAGGAGCACGCGGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCTTTCCAGTAGAGGAGTCTGAACGTAGTGTTTACACACACCGTAAAGAGATTGAgGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTCAATAATGGCTTGAGGAATTGTTTTGGTGAACACTTTCTCACTTTCTGTGAATGGAGGCTAACATTTTGTACAGTTTATCTGCGGGGTCAGAAGCTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg
>TCONS_00029034
CGCGGAAACCGAATGGTCTTTTCGACTTGGTTCAGAGGAGCACGCGGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCATTTCAGTTGAGGAGTCTGAACATGGTGTCAAACAAAAGCTAAAGAGATATAGATGCAGAATGAATCTTTCCAGTAGAGGAGTCTGAACGTAGTGTTTACACACACCGTAAAGAGATTGAgGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTCAATAATGGCTTGAGGAATTGTTTTGGTGAACACTTTCTCACTTTCTGTGAATGGAGGCTAACATTTTGTACAGTTTATCTGCGGGGTCAGAAGCTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg
>TCONS_00029033
GGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTC
>TCONS_00029035
TTTCGACTTGGTTCAGAGGAGCACGCGGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCTTTCCAGTAGAGGAGTCTGAACGTAGTGTTTACACACACCGTAAAGAGATTGAggtaaatatttctttttttttgttgcactTTACATAAGAAGCGAGACTAGAGTCACATCCTGACGTTGCTCGTTGTCTTGGTGTGCTATAGTACTCGCAGAATAACCTCTCTGCTTATTCATTGGCTGCTGCTTTCCATTGCCCAGCCAATCACCAGCTCTGAAACATGCTAGATTTATGTAACCCTTCATGTACAAACCTTTTCAGATTTGATGCAGTTGGTTGAACCGCCATAAAGTTTTgagttaaagttttgtttttattcatatttgacTTTTTTGCATGTTTAGAcctgtcacatgattcttcagaaattttaattttctgcaataaaaaaactgactattttaatactttttttttttttttttgcaatcaaaATGGTTGAGGTcattataaaataatcaaattttaaGGTCTAGTAGTGTCTGCACTCCATTCAAAAACAACCTCAAATATATtgtcagacattctgtgaa
>TCONS_00029036
AGCGAGACTAGAGTCACATCCTGACGTTGCTCGTTGTCTTGGTGTGCTATAGTACTCGCAGAATAACCTCTCTGCTTATTCATTGGCTGCTGCTTTCCATTGCCCAGCCAATCACCAGCTCTGAAACATGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000105273 ENSDARG00000112208

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030196 False 620 lncRNA 0.37 3 18832068 18841641
TCONS_00029773 False 3055 lncRNA 0.35 2 18832068 18841798
TCONS_00030197 False 739 lncRNA 0.42 8 18832068 18844413
TCONS_00030199 False 945 lncRNA 0.41 6 18832068 18844413
TCONS_00030198 False 946 lncRNA 0.41 6 18832068 18844413
TCONS_00029034 False 1013 lncRNA 0.41 7 18832068 18844413
TCONS_00029033 False 583 lncRNA 0.43 4 18832318 18842385
TCONS_00029035 False 787 lncRNA 0.39 4 18834418 18844394
TCONS_00029036 True 131 snoRNA 0.49 1 18834727 18834857

Neighbor

gene id symbol gene type direction distance location
XLOC_014691 NA coding downstream 78875 18743977 ~ 18753193 (-)
XLOC_014692 NA coding downstream 81750 18749605 ~ 18750318 (-)
XLOC_014690 st3gal1l3 coding downstream 149558 18657029 ~ 18682510 (-)
XLOC_014689 rps18 coding downstream 205043 18617608 ~ 18627025 (-)
XLOC_014688 FP085400.1 coding downstream 234742 18596786 ~ 18597326 (-)
XLOC_014696 ppt2 coding upstream 2510 18846923 ~ 18855717 (-)
XLOC_014697 NA coding upstream 15643 18860056 ~ 18863204 (-)
XLOC_014698 FP074902.1 coding upstream 34589 18879002 ~ 18880124 (-)
XLOC_014699 FP067442.1 coding upstream 98313 18942726 ~ 18953206 (-)
XLOC_014700 dync1li1 coding upstream 145498 18989911 ~ 19026028 (-)
XLOC_014711 CR382300.3 misc upstream 884277 19728690 ~ 19728755 (-)
XLOC_014687 BX927404.1 non-coding downstream 346187 18484706 ~ 18485881 (-)
XLOC_014684 BX649471.2 non-coding downstream 467103 18363317 ~ 18364965 (-)
XLOC_014701 NA non-coding upstream 431400 19275813 ~ 19339337 (-)
XLOC_014704 NA non-coding upstream 614638 19459051 ~ 19461297 (-)

Expression


Co-expression Network