XLOC_014697


Basic Information

Item Value
gene id XLOC_014697
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18860056 ~ 18863204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030200
TGGGTTAAGACCCTGCAGTTGAGCTGTGCTATTATCTGAAGCTCTGTGCTTTGATCGCTTAGGCCATGAGGATCCTATTGTGACTGCACAGCTGCCCGGAGTGCTGACCCTCACATCGCTGACTATTGTGTCTGGTCAATCACTTATTAAGACCCTAACACAGCAGGGAGAGAccacttctcttctcttctcttctcttctcttctcttctcttctcttctccttCCCCTCTCTTCTCTTTTAAGTTCATCTGTCTGGTTTGATACTGACGGTCAGGTGCTGATTGTCCAAACGCAATTCTTGTGCTTGTGTGAAACAGGAGTTGTGGATGGACATCACGCTCCTGTCTGGTCCTCACATCTACAGGATGGGCCAAGTAAAGATTTAAAAAGGACTTGTGGTCCTTCAAACCACAGttgactgtttttaaaataagacaCTAATTCAGCTTTTGGTGATTTGGTTCCGTCTTCTCTTCAGTCTTTAGATTATTcatgtattaaaaaaacatataatcaGATTAcacaattatttcatttttgcaCACTTTGCTTCTCAGACGCAATTGGAGTAATAAAAACTTGGTTAAAAACATGTAATTtatcactttttttctgtttagatgtGTATTTAGATCAATGGTCCTTAACCAGGGGTCGATGACACACTCAACTTCCTAAAGACTACCAAGGTGACATAGCTACTTAGAACAAGACAAATATTGGAAATATTATGGCTTATGATATTGCTAAAACATctacaaattaaatgttatttaaattcaCTCACTAACTTTTATTTCTGTTATGattaactactttttaaaataaattttatctaCAGATTATTGATTTAAGGCAGGTTATCTTAAATGGGGAGCCATTCAAAAGAACTAACTAATTaacgaaaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaattgtgACCATGTGTCCATTGGGCAGGTGACCTGTGAACATGCAAATGTTGTGAAATAAAGAGATTTATAGTTATaacatatatagagagagagtttCACGGGAGAACAAGCACAGACAATACAAATGAATATGACCTAATCTAAATTAatactatttaattttaattgcagACATTGCGTCTTGTGTCTTTTATATGTTTTAGAATAAGGATGAAATAGAGAAATAGGATCCATAACTAACTCCAATAAACATTCTAAATAATATAgaaattgatttttcttttttaatacttAATACAAAATACTTTAAGACAAAAAAATCGAAATGGATATAAACTGAAGACAGAGATTTAAAGATAAAGCAAATAAGAATATAAAGCAGTGGCTCTTAAGAGCTTGaacttttacattaaaaaaaacaacaacattgtatCAAAACAACAGGGTGAAAATCTAAaattcaaaagaataaaaaagactcAAATCAAAGGTATAGTGTGACAATCTATCTGTGCAGATGGAAATGAAAAAAAGCAACACGGAGAACAGCAGAAAGAAAGAATAAGGGAGAGAGATCAAGAGAGATGTGCATTAATATGCTAATTGCCTGAGTCAATACACAACAGTTCTACTGACCAGACTAATCACTGCTGGACACACACTGAGGTTAATCCCCCCCCCCACTCACTCCcccatacacgcacacacactaatcCTCACTCACATTAAGAAGCATGTGTGTGCACACATCAGGCATGCTTGCACATTTGCATGGACACAGCACACATTACCCACTTTCACCCACCCacccagccacacacacacacacaatacttttCTCTTGtcttgattaaaaaatatatagtacatTTAGTACATGGAATTCTCACGttctaatgttattttattttcagtgtgtCAAAGGCTGGCTAACATTTCATGCATGAATAAACTTGTCATTTTTGGAATTTTGTATAACTTGTACTAATGTAAATATATTGTGGAAATAGACTTGTCATTATGcttccataatttttttttcaataaacttAGTTTTCTT
>TCONS_00030201
ATCAGAGAGGAGACTACCAACAGCATCATGTAAAGGAGGACatgtGTATTTAGATCAATGGTCCTTAACCAGGGGTCGATGACACACTCAACTTCCTAAAGACTACCAAGGTGACATAGCTACTTAGAACAAGACAAATATTGGAAATATTATGGCTTATGATATTGCTAAAACATctacaaattaaatgttatttaaattcaCTCACTAACTTTTATTTCTGTTATGattaactactttttaaaataaattttatctaCAGATTATTGATTTAAGGCAGGTTATCTTAAATGGGGAGCCATTCAAAAGAACTAACTAATTaacgaaaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaattgtgACCATGTGTCCATTGGGCAGGTGACCTGTGAACATGCAAATGTTGTGAAATAAAGAGATTTATAGTTATaacatatatagagagagagtttCACGGGAGAACAAGCACAGACAATACAAATGAATATGACCTAATCTAAATTAatactatttaattttaattgcagACATTGCGTCTTGTGTCTTTTATATGTTTTAGAATAAGGATGAAATAGAGAAATAGGATCCATAACTAACTCCAATAAACATTCTAAATAATATAgaaattgatttttcttttttaatacttAATACAAAATACTTTAAGACAAAAAAATCGAAATGGATATAAACTGAAGACAGAGATTTAAAGATAAAGCAAATAAGAATATAAAGCAGTGGCTCTTAAGAGCTTGaacttttacattaaaaaaaacaacaacattgtatCAAAACAACAGGGTGAAAATCTAAaattcaaaagaataaaaaagactcAAATCAAAGGTATAGTGTGACAATCTATCTGTGCAGATGGAAATGAAAAAAAGCAACACGGAGAACAGCAGAAAGAAAGAATAAGGGAGAGAGATCAAGAGAGATGTGCATTAATATGCTAATTGCCTGAGTCAATACACAACAGTTCTACTGACCAGACTAATCACTGCTGGACACACACTGAGGTTAATCCCCCCCCCCACTCACTCCcccatacacgcacacacactaatcCTCACTCACATTAAGAAGCATGTGTGTGCACACATCAGGCATGCTTGCACATTTGCATGGACACAGCACACATTACCCACTTTCACCCACCCacccagccacacacacacacacaatacttttCTCTTGtcttgattaaaaaatatatagtacatTTAGTACATGGAATTCTCACGttctaatgttattttattttcagtgtgtCAAAGGCTGGCTAACATTTCATGCATGAATAAACTTGTCATTTTTGGAATTTTGTATAACTTGTACTAATGTAAATATATTGTGGAAATAGACTTGTCATTATGcttccataatttttttttcaataaacttAGTTTTCTT
>TCONS_00029042
TTAAGTTCATCTGTCTGGTTTGATACTGACGGTCAGGTGCTGATTGTCCAAACGCAATTCTTGTGCTTGTGTGAAACAGGAGTTGTGGATGGACATCACGCTCCTGTCTGGTCCTCACATCTACAGGATGGGCCAAGTAAAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0005764 lysosome cellular_component
GO:0005773 vacuole cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0031672 A band cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000102905

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030200 False 2065 lncRNA 0.34 1 18860056 18862120
TCONS_00030201 False 1484 lncRNA 0.32 2 18860056 18863204
TCONS_00029042 True 142 miRNA 0.47 1 18861739 18861880

Neighbor

gene id symbol gene type direction distance location
XLOC_014696 ppt2 coding downstream 4339 18846923 ~ 18855717 (-)
XLOC_014693 NA coding downstream 15643 18832068 ~ 18844413 (-)
XLOC_014695 FP074902.3 coding downstream 18513 18841413 ~ 18841543 (-)
XLOC_014694 FP074902.5 coding downstream 21515 18838411 ~ 18838541 (-)
XLOC_014691 NA coding downstream 106863 18743977 ~ 18753193 (-)
XLOC_014698 FP074902.1 coding upstream 15798 18879002 ~ 18880124 (-)
XLOC_014699 FP067442.1 coding upstream 79522 18942726 ~ 18953206 (-)
XLOC_014700 dync1li1 coding upstream 126707 18989911 ~ 19026028 (-)
XLOC_014701 NA coding upstream 412609 19275813 ~ 19339337 (-)
XLOC_014702 smarcc1b coding upstream 478973 19342177 ~ 19379084 (-)
XLOC_014711 CR382300.3 misc upstream 865486 19728690 ~ 19728755 (-)
XLOC_014692 NA non-coding downstream 109738 18749605 ~ 18750318 (-)
XLOC_014704 NA non-coding upstream 595847 19459051 ~ 19461297 (-)
XLOC_014706 NA non-coding upstream 647353 19510557 ~ 19512337 (-)

Expression


Co-expression Network