RNA id: TU259193


Basic Information

Item Value
RNA id TU259193
length 312
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G226596
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13983486 ~ 13983797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctttagacttgagaaatttcactctaaaaataacactatccataagttaaacattgatggtgttattacagatgaccAAAAAGTAATCTCTAAATACTGTAGCAATTTGTACAGAAAATGTTATAGCTCTACGTACTGTCGGGAATCCACAGATATGTTTTTTAACCcactgaataatgttcactctatcagtgatatagaatctaaacagtgtgatgaacccatcaaagttgaagagattatagagtctatcaaacatctaagaacaataaatcaccaggtgttgatggaattacatcagaattttacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259191 lncRNA downstream 1244 13981890 ~ 13982242 (-) True G226594
TU259190 lncRNA downstream 1845 13981337 ~ 13981641 (-) True G226593
TU259080 lncRNA downstream 78643 13828830 ~ 13904843 (-) True G226504
TU259168 lncRNA downstream 82743 13900363 ~ 13900743 (-) True G226571
TU259100 lncRNA downstream 124647 13847444 ~ 13858839 (-) True G226524
TU259194 lncRNA upstream 80 13983877 ~ 13984102 (-) True G226597
TU259202 lncRNA upstream 49824 14033621 ~ 14033969 (-) True G226605
TU259258 lncRNA upstream 141266 14125063 ~ 14126065 (-) True G226643
TU259263 lncRNA upstream 149493 14133290 ~ 14133632 (-) True G226648
TU259264 lncRNA upstream 150287 14134084 ~ 14134378 (-) True G226649
XM_021591682.2 mRNA downstream 2559 13971779 ~ 13980927 (-) True si:ch211-261d7.6
XM_021591698.2 mRNA downstream 2560 13963849 ~ 13980926 (-) False si:ch211-261d7.6
XM_021591689.2 mRNA downstream 2840 13971779 ~ 13980646 (-) False si:ch211-261d7.6
XM_021591656.2 mRNA downstream 33104 13940704 ~ 13950382 (-) False LOC110510265
XM_021591765.2 mRNA upstream 2845 13986642 ~ 13992932 (-) True zgc:66448
XM_036975390.1 mRNA upstream 11399 13995196 ~ 14003872 (-) False LOC110538195
XM_036975391.1 mRNA upstream 11399 13995196 ~ 14003872 (-) False LOC110538195
XM_036975392.1 mRNA upstream 11399 13995196 ~ 14003872 (-) False LOC110538195
XR_005051404.1 mRNA upstream 16036 13999833 ~ 14022842 (-) False LOC110538195
TU259125 other downstream 55653 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 639111 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 758971 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 803214 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 916129 13066873 ~ 13067357 (-) True G226124
TU259117 other upstream 15939 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 444996 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 539383 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 539459 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 614992 14598789 ~ 14636710 (-) False LOC110503689

Expression Profile