RNA id: TU270942


Basic Information

Item Value
RNA id TU270942
length 1429
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G237086
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23289532 ~ 23290982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTCAACAACTCAGATTTTGTTCTCTGTTTTGAAGTCTGTATTCCCAAAAAAGTACAAAATAAAACAAGTACATCAAAGGATTAGAAATCACATCAATGAAAACGAAGACACATTGTGTTGTTTCTTTTATATCAATCCAAGCATTTTTTCCATATATTTATACATACTCACTTAATTAGTCAGACAAACATCGAAACCTCTCAGTaacttttatattttttacaatgttTAACTTCTTTTTTAAAACTCCATATGATTTTTTTCTTTTTACAAAATACACCAATGCAGGCAGGGGAATATgagtgtatatgtgagtgtgtgtatgtacatatatgtgtgtgtttgtgtgttctggtgtgtgtatgtacatatatgtgtgtgtttgtgtgttctggtgtgtcggtttgtgtgttctagtgtgtgtatgtgcgtgcgggCAGGGGGTAAGGGGGAGCAGAGTGACAGCAACGAAGGGGCAGGGCAGCGAGGCAGGGGGGCGTGATTGGGCGTAAGGGGTCGCTATAGGCGGTGGCAGGTCAGGGGGGAGTTTCAGCTGGggtggtgttttttttttgcagcgGTGTGGGCCGCTTGGTGGCAGTGTTGCCGTGTTGTAGACGGTGGTTGGCTGGTGGTAGCAGTTGTAGACGTTGTGGCTGGGATAGAGAGCAGGACTGGAGCTCTCATCCCGACCCAGGCTTCTACATCATGTTGTTCTGCAGTGAGTTTACCTCCGAGGAGTTCTCCTCGCCCAGTACCTTGTGGTTCTCGTGTTTGGGGGTCAGGGAGTTGTGGATGTTCAGGGAGTCGTCCTCCTTGGGCACCGGGGCCTTCACGGGGTCCTCCAGCTTGTTCTGGGCATTAGGATCATCCTGCCAGGGACGGACGGACAGATGGACGGAGGGAAGAGAAAACACGGTTAGGCCCACCCAGTCAGACCGCCCAAAACTGTTATAAACCAAACCCTCCCTCTGGTCTACCATGTGGTCTTTTGTTGCATCCTGTTATTGGGACTGTCACATCATTGGCCAATAGATGGCCTTCAACCAATCAATTTATAGACCCTTATAGACAGACCACTGCTATTGCATATTTTCATTCCCTTAAAGAGATGACAATATCTGAAATACCATCTTAACATCTTCAAATATTAGAGCCTCTAACTCCACCTGTTaccacccctctcccctccatccctctctgtaaTCCGATTTAATATATTGTTTGGATATAAATATCCCCAAATCCCATATTATCCACACTACCTGACTATCCGTCAATGGAAGAGAGCTGTGAGTCAGCTAACTGTTAAAAAGACCCATGTACGTTGGCCGTGGCTATCCAATTGTTTCAACATCATGCTCTCTTTGCACATTTGTTTTGGTTGAAGTGACATAGAGGTGATTGGAGAACTGTATGAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270967 lncRNA downstream 9342 23266069 ~ 23280190 (-) True G237108
TU270950 lncRNA downstream 53590 23235738 ~ 23235942 (-) True G237092
TU270934 lncRNA downstream 81552 23207750 ~ 23207980 (-) True G237080
TU270923 lncRNA downstream 95089 23194023 ~ 23194443 (-) True G237069
TU270922 lncRNA downstream 98495 23190611 ~ 23191037 (-) True G237068
TU270973 lncRNA upstream 3138 23294120 ~ 23294323 (-) True G237114
TU271032 lncRNA upstream 88064 23379046 ~ 23386403 (-) False G237162
TU271030 lncRNA upstream 89137 23380119 ~ 23386403 (-) False G237162
TU271033 lncRNA upstream 89137 23380119 ~ 23386403 (-) True G237162
TU271246 lncRNA upstream 394172 23685154 ~ 23686114 (-) False G237366
XM_036972420.1 mRNA downstream 93189 23172610 ~ 23196343 (-) True LOC110514368
XM_021593802.2 mRNA downstream 96750 23172610 ~ 23192782 (-) False LOC110514368
XM_021593788.2 mRNA downstream 125148 23144516 ~ 23164384 (-) True LOC110514348
LOC118944658 mRNA downstream 146566 23140834 ~ 23142966 (-) True LOC118944658
XM_036972421.1 mRNA downstream 148644 23138636 ~ 23140888 (-) True LOC110514382
XM_036972432.1 mRNA upstream 51141 23342123 ~ 23368891 (-) True LOC110503934
XM_021593864.2 mRNA upstream 115271 23406253 ~ 23495800 (-) False LOC110514498
XM_036972455.1 mRNA upstream 115271 23406253 ~ 23563489 (-) False LOC110514498
XM_036972463.1 mRNA upstream 115271 23406253 ~ 23563489 (-) False LOC110514498
XM_036972471.1 mRNA upstream 115271 23406253 ~ 23563489 (-) False LOC110514498
TU270901 other downstream 100501 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 714543 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1534031 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1546121 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1790700 21498408 ~ 21498832 (-) True G234621
TU271267 other upstream 480542 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 889574 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 889574 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1230237 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1478580 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile