RNA id: TU271030


Basic Information

Item Value
RNA id TU271030
length 2598
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G237162
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23379046 ~ 23386403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGGGGGACGACAAAAGCTCTGGGTGGATGAGCAGGCAGAAATATTAACAGCTTGAAAGAAAGATAATGAAAATGGGTATGTTTAGATAAAATGCTTGTTATTGTTTTTCTCGCAAAATACTGAGAAATATTACGCTATTCATAAATGTATTGCCTTTGGTGCGCGCGCTGACGGAATTTCCCGCGCTCTTCTGATACAACAGGAGCCACCAGTGCTCCAGTATCTTCCCACATCTGTAAGTGATTGTCTGAGGAAGGCAGGAGGAGCAGTGACAAGATGGATGAGGGGTCCAGGATGGCTGAGGGGAAGGCTGCTTTTGTcttcgtcctcctcctcttcatcgccCTGGCCTTGCTCATCGTGCGCTGCTTCCGCATCCTGCTGGACCCATACCGCAGCATGCCCTCCTCCAACTGGACAGACCACACAGAGAAGGACACGTTTGACTACCGCATTGTCTAAGGAGGACCTAAGGAGCTCCCTCGACACTGTTTTTCAGTTGAAGCACTGTCAACTATTGCAATGCTCGAGGAGCAACTTTGTTAATCCATTTTGCCCAAGGACCACATGCTGTATGACTGCCGGTGCCAAACCACCAGGGACCCCTTTGTATTAGATGCAGCCTTTGAGCATGCATCACCTAAAGGCCTTTGTCTGCTCTATTGTAACATGTTATATCAATTCCTTCGCCAATTACTGCAGTCATGAGCAGTAATAGCCAGCCCTTATTACCCTAATGACAACACATACGAGTGATTCCATACGAaaccaggtgggaaaaaggccATAATtttgctgatttaaaaaaaataagatttCATCCATAGAATGGTCCTTTGGAAGAATGATTGTTGACaaatatttgacatttgtatctaaaagcataattgagaaataatttATCAAAGTTGTCATATTTATGACATTTTGGCCTTACTCAGGCCTCCTAAAATACgccataatgtttcatctgtatgGGCTGCAAAGATGAAAATTGGTGTAATATTAATCTTTACCGCTTGCTCTGTAATATGAgtagcatttttattttttattttttatgaatgttgAAAAATAAAGACCTGAATAttgaaaaaacaacattttggaTTTGGCACATTTTTTTTGatattgttgaacataatacTCTACGGCCCTCCCACATAAGGAACTcccttaattgaaaggaaaaaccaaaaacctgcagacactcggccctcggtggaatgagtttgacacaacTGCGCTACGGGCATATCAAAGTTCCAGAGTGGGATCTATGCTACTTTTATAGTTATGATCCAGTTTGTTAACATtactaaaatggattcaaaatggtcggcctctgctggtgatttgcaTGAGGTGCAATGATGCAAGTAAAAGGAGGGCTGGGATTGGTTACATTGTCTGCTGTGCCAATTTCTCTATATAAAATGGGCCATAAAGTTAAACTAGCATTGATCCCACTTTGGAACTTTGATATGCCCCTAGagtatattatgttcaacaatataTTGAAACATTTGCCAAATACATATTTGTTTCTATATTCATGTTTCTATTTTTCAATATTCATGTTTATATTTTTCAATATTCATAAATGAATGTACAAAAATGTTATTGAAATCATAATACTACTCATATTACAGAGCAAGTGTTAAAGTTACATATGACACCAATTTTTGCTTTTTAGCATCTACAGATGAAAccttatggagtcttaaaggaggcctgggtaTGGCAAAAATGCCATAATATGGCAACTTTGATTCAgtatttctcaattatgcttttagatacaactgtcaaatatatgtcaacaatccttcctccaaagCATCATTCTATGGATGAAATGTTTCAAAAATCCCCAAATCATCGTATTTTGTTTGTTCTGGTTTCGTATAGAATCACTTATAAGGAACATCTTCTACCAAATGGTCTAACACTATAGGCAATCACCTAAGGTACCTGCTGTAACACCTATCAAATCTATCTCCTGAAGACACTCTCCAGGCTACCTTGTTGCCACTACTATTGCATCATTTCACTACCCCATCCCCTTAAcctttcttggtagtcttaaacaaatcgacttagaaaaaaaagtgaaaacctcacacacatggtaatGGGTTTTAAAAAATAAGACACttttaccatgtcagatatagagttgaaatgtattcaattttgagttttcATCTCAATATTACATTTTATAGACATCACAGAGTACTGAAATATAACACAACCGTTTGACATAGCAACGCTGAATTTGTATTAATTATGagaaatatgaataacattccacccatgagaccACTTTTGGTCATtcgactgcaggaaagggctacaggtGCTCTATGCAACAGTTCCTCCTGCAAATAGGCCTACATTTCAATTGTGTACTTAAAGGAATTAAACTCCATGTAAGAACAAGAAAAACATTTGAATGCCGTTTGAAGCTATAAAGTTGCTTGTTTGCTGCAAGGTCCTCAGTATATACACAGTGTATCCTGTGGATTTTTTTTAACTTAAATTGTCTACTTTGGCCAAGGTACAAAATGCACAAACAATCAATCAAGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270973 lncRNA downstream 85796 23294120 ~ 23294323 (-) True G237114
TU270942 lncRNA downstream 89137 23289532 ~ 23290982 (-) False G237086
TU270941 lncRNA downstream 89137 23290088 ~ 23290982 (-) True G237086
TU270967 lncRNA downstream 99929 23266069 ~ 23280190 (-) True G237108
TU270950 lncRNA downstream 144177 23235738 ~ 23235942 (-) True G237092
TU271246 lncRNA upstream 298751 23685154 ~ 23686114 (-) False G237366
TU271247 lncRNA upstream 298751 23685154 ~ 23686730 (-) True G237366
TU271290 lncRNA upstream 363151 23749554 ~ 23749821 (-) True G237396
TU271353 lncRNA upstream 480869 23867272 ~ 23867534 (-) True G237457
TU271358 lncRNA upstream 485267 23871670 ~ 23871871 (-) True G237462
XM_036972432.1 mRNA downstream 11228 23342123 ~ 23368891 (-) True LOC110503934
XM_036972420.1 mRNA downstream 183776 23172610 ~ 23196343 (-) True LOC110514368
XM_021593802.2 mRNA downstream 187337 23172610 ~ 23192782 (-) False LOC110514368
XM_021593788.2 mRNA downstream 215735 23144516 ~ 23164384 (-) True LOC110514348
LOC118944658 mRNA downstream 237153 23140834 ~ 23142966 (-) True LOC118944658
XM_021593864.2 mRNA upstream 19850 23406253 ~ 23495800 (-) False LOC110514498
XM_036972455.1 mRNA upstream 19850 23406253 ~ 23563489 (-) False LOC110514498
XM_036972463.1 mRNA upstream 19850 23406253 ~ 23563489 (-) False LOC110514498
XM_036972471.1 mRNA upstream 19850 23406253 ~ 23563489 (-) False LOC110514498
XM_036972489.1 mRNA upstream 19850 23406253 ~ 23563489 (-) False LOC110514498
TU270901 other downstream 191088 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 805130 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1624618 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1636708 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1881287 21498408 ~ 21498832 (-) True G234621
TU271267 other upstream 385121 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 794153 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 794153 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1134816 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1383159 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile