RNA id: TU289578


Basic Information

Item Value
RNA id TU289578
length 227
lncRNA type intronic
GC content 0.41
exon number 1
gene id G254135
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38349188 ~ 38349414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggattgagatgccGCTATAAACTGATGGATTTAGATTGGGATTGTTTTTTATCACGTTATTTAGATTGACACACAGGTGCttcaatagactcttaaggagTTGAGGGATGGAGTTCAGACAGGCTACTTTAGAAACTTTCTGAATGGACATAGAGAATAAgcaaactctctctcacacacacacacacacacacacacaaagcctaaAAGGGCCCTTCAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289576 lncRNA upstream 1132 38347768 ~ 38348056 (+) True G254133
TU289575 lncRNA upstream 2016 38346910 ~ 38347172 (+) True G254132
TU289574 lncRNA upstream 2791 38346169 ~ 38346397 (+) True G254131
TU289569 lncRNA upstream 5339 38341359 ~ 38343849 (+) True G254127
TU289567 lncRNA upstream 8940 38340035 ~ 38340248 (+) True G254125
TU289579 lncRNA downstream 196 38349610 ~ 38349838 (+) True G254136
TU289580 lncRNA downstream 675 38350089 ~ 38350307 (+) True G254137
TU289581 lncRNA downstream 1517 38350931 ~ 38351163 (+) True G254138
TU289584 lncRNA downstream 7465 38356879 ~ 38357097 (+) True G254141
TU289587 lncRNA downstream 9912 38359326 ~ 38359548 (+) True G254144
XM_021596833.2 mRNA upstream 99166 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA upstream 99166 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA upstream 99166 38234343 ~ 38250022 (+) True LOC110519944
XM_021596828.2 mRNA upstream 593736 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 657290 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_036974005.1 mRNA downstream 286532 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 296882 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA downstream 296883 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA downstream 296883 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA downstream 296884 38646298 ~ 38760490 (+) False LOC110519946
TU289268 other upstream 256454 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 621850 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1721646 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1824015 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 3127816 35219832 ~ 35221372 (+) True LOC110519579
TU289648 other downstream 91752 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 251073 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 494096 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1309645 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 2090655 40440069 ~ 40452180 (+) False LOC110519969

Expression Profile