RNA id: TU290758


Basic Information

Item Value
RNA id TU290758
length 2002
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G255195
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39408279 ~ 39410302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggctctcatgagggccgccacaggaaaggaagaccaagttacctctgctgcagaggataagttcattagttaccaagcctctcttctgtataccagccctaccttgtcacaacacaactgattggctcaaacgcattaaggaaagaaattccacaaattaacatggcacacctgttaattgaaatgcattgcagGTGTCTACCTCATagagctggttgagataatgccaagtgtgtgcaaagctttcatcaagacGAAGGGTGGCAACTTTaacgaatctcaaatataatttgtttaacacttttttggttactacatgattccatatgtgttgttacataatttggatgtcttcactattattatacaatatagaaaatagcacaaataaagaaaaaccctggaatgagtgtgtccaaatgtctgtctgtctatgtgtctgtctgtctgtctacatacatatatatacatacatacatacatacacagttaaagtctgaagtttacatacaccttagccaaatacagttaCTAATTTTTCTCCAATTCCTGCCATTTAACCCTAGTAAATATTcccggtcttaggtcagttaggatcaccactttattttaagaatgtgaaatgccagaataatagtagcgagaatgatttatttcagctttaatttctttcatcacattcccagcgggtcagaagtttacatacactcaattagtatttggtagcattgtctttaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtgaattttggcccaatcctcctgacagagctggtgtaactgagtcaggtttgtatgcctccttgctcacacacgcttttcagttctgcccacaaatgttctataggattgaggtcagggctttgtgatggccactccaatgcctggactttgttgtccttgggccatttttccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgattcaatatatccGCGTAATTAtccttcctcgtgatgccatatatttttgtgaagtgcaccagtccctcctgtaaaacacccccacaacatgacgctgtcACCCCcgagcttcacggttgggatggtgttcttcggcttgcaagcctcccccttttcctccaaacataacgatggtgattatggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaaatgtgatctttgtccccaagtgcagttgcaaaccgtagtctagcagtggcttcttccttgttgagcggcctttcaggttatgttgatataggactcgttttactgtggatataaatacttctGTACCCgttacctccagcatcttcacaaggtactttgctgttgttctgggattgatttgcacttttcgcaccaaagtatgttcatctctaggagacagaacgcgtctccttcctgagtggtatcacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagctgAACTTGGTGCATTCAGGCGTtgggaaatttctcccaaggatgaaccagacttgtggaggaggTCTCCactttttcttctgaggtcttagctgatttcttttgattttcccatgatgtcaagcaaagagcacactgagtttgaagctaggccttgaaatacatgcacatgtacacctccaattgactcaaattatgtcaattagtcccTCAGAAGCTCCTAAGCCATGACAtcatctggaattttccaagttgtttaaaggcccagtcaacttagtgtaggtaaacttctgactcactggaattgtgatacagtgaattataagtgaaataatctgtcagtaaacaattgttggaaaaattacttgtgtcatgcacaaagtagatgtcctaaccgacttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290643 lncRNA upstream 138314 39269618 ~ 39269965 (+) True G255115
TU290370 lncRNA upstream 151522 39255652 ~ 39256757 (+) True G254870
TU290611 lncRNA upstream 215249 39192802 ~ 39193030 (+) True G255084
TU290610 lncRNA upstream 217454 39190477 ~ 39190825 (+) True G255083
TU290609 lncRNA upstream 218661 39188324 ~ 39189618 (+) True G255082
TU290829 lncRNA downstream 93229 39503531 ~ 39524024 (+) True G255262
TU290914 lncRNA downstream 236389 39646691 ~ 39646895 (+) True G255344
TU290916 lncRNA downstream 237517 39647819 ~ 39648901 (+) True G255346
TU290918 lncRNA downstream 242886 39653188 ~ 39653459 (+) True G255348
TU290919 lncRNA downstream 243954 39654256 ~ 39654503 (+) True G255349
trnaf-gaa mRNA upstream 14566 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596859.2 mRNA upstream 194175 39171897 ~ 39214104 (+) False LOC110519950
XM_036974014.1 mRNA upstream 647789 38646298 ~ 38760490 (+) False LOC110519946
XM_021596867.2 mRNA downstream 197867 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA downstream 197868 39608170 ~ 39621078 (+) True LOC110519956
XM_021596874.2 mRNA downstream 248451 39658753 ~ 39668297 (+) False LOC110519960
XM_021596883.2 mRNA downstream 296139 39706441 ~ 39709243 (+) False LOC110519963
XM_021596880.2 mRNA downstream 296139 39706441 ~ 39709441 (+) False LOC110519963
TU290310 other upstream 563723 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 807413 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 966545 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1315545 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 1680941 37726948 ~ 37727338 (+) True G253299
TU290915 other downstream 248757 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1029767 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1029767 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4841767 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 5110117 44520419 ~ 44525408 (+) True G262037

Expression Profile