RNA id: XM_021596874.2


Basic Information

Item Value
RNA id XM_021596874.2
length 3661
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110519960
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39658753 ~ 39668297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAAATTGAATGCTGCTGAACGTTTTTTGGGCGTTGTGATTTCACAGCCGAGCCAGTGCAGGAAATCCTGTCAGTGAATGTTCCGCCATCACAGGCCCCTGAGTAGGGATGTATTTAGCAGTGGACTGTGATTGAAGAGctggtggtggtaatgcaacattaacattggatgccaaccgctcTTAAACCCCATCGAAGAAGAAAAATAGATAACTTCTCTTGAACATGGTTTCGTCTTTTTGGAGAGATGTCGTAGGGGTTGGTCTATTTGCCCTGGCTCATGCTGCTTTCTCAGCGGCACAACATCGATCCTACATGCGATTGACAGAAAAAGAAAATGAAACCCTACCAATAGATATTGTTTTACAGACTTTGTTAGCTTTTGTTCTGACCATTTATGGTATTGTCCACATCTCTGGAGAGTTTAAAGATATGGATGCATCCTCAGAGCTGAAAAACAAGACGTTTGACACATTGAGGAACCACCCGTCTTTCTACATGTTCAATCATCGTGGTAGGGTGCTCTTCTGCTCTCCCAACCGAGAGGTCTCCAACATCCCAAACGCAGAGGCCCTGCGAAACCCCCTGCGGCTACGCAAGCTGAAGCATTTGCACTGATACTTGCCTTCCCCACCCACATGTCTTTATTTCTGTGCACAGATAAGCTTTTTGGTTGGAACCCACAAAGTAATTTCTTCTACTTTTAATTTGCCTTAGTACATATATTAATATGCTGTACAAATGTGCATCTCCTCCCATAAAAATGGTTACCATATTTAACTCCTGACTGTCAACCAGTCTGACTGTCAACAGTTTTTCAGGCAGATTTTTTTGTATATAATTGTAATTGCTTAGAAGTAAACGGATTTGACACATCTTCCCCTTACTTAGGTAAGGGTAGGGTAAGCTGTATGTGTCAAATCCTTTAAGACTTCCTAAGCAAGTGTTCCCCTTTTTTAGACAAGGGGCATGATGTTTTGTTTGCCACAATACAGCTGTCTGGaactattttttaattttttttatctgCAGATATGAGATTTTGTTTTATCTAGTAAAAAGTCTACACTTCTGTTGAGAGAATTCATGACCTGATCTCCTGGAGTTTAAAATTAGGCTTTGGTGATTATTCTGTATGCAATAAAGTTACCACGGTCATTGAAGTCACACAGGTCAAGCCTGAAGGATGCAGCATGGAAAGCAGAGTAAGTCAGTGTTAGAGCAATGCTAATGACACTGTGAACACAAAGTAGAGACTAATGGTACATTTTGTTTGGGCAGTGTTTTTTATTTGGCCTTTTAAGATTCAACATAGTGTTTTAACTTAAAATCTATGATGTTGTCAGTGTGTTAGATGCATTTCTGCATTTATTGGTCGAAGAAAACCGAATGCATTTAATGTCTTGCAGATATACgctacatgaccaaaaatatatggacacctgctcgtcgatctcattccaaaatcgtgGGTATTAATATGGATTAATTTGCTGCTAagacagcctctactcttctgggaaggctttgcactagatgttggaacattgctgcgcggacttgcttccattcagccacaagtgcaTTTTTGAGGTCGGACacatgttgggtgattaggcctggctcgcagtcggagttctaattaatcccaaaggtgttcgatggagttgaggtcggTGCTTTGTGCAAGCCAGTtgagttcttccacaccgactgctacaaactatttctgtatggactttgcGTTGTGCATGGGGGCATGGTCATGCTGAGACAAGTAATGCCCtttctcaaactgttgccacaaagttgtaagaacagaattgtctagaatgtcattgtatgctgtagcgttaagattttccttcactagAGCTAAATGGGAGCCTAGCCCATTATTCCTCCTCAACCAAACttaacagttggcactatgcattggggcaggtagcactCTCCTGGCATACGCCAAACCCCGATTTGTCCCTCGGACTGCAGGATGGTGAAGTGTGcttcatcaccccagagaacgcatttccaagCTTTACACAACTAcagtcgacgcttggcattgcacatagtggtcttaggcttgtgtgcggatgctcggtcatggaaacccatttcatgaagcccctgaacagttttttttttgtttgtgttgatattgctttcagaggcagtttggaacttggtagtgagtgttgcaaccgagtacagagtttttacgcgcttcagcacgtggcggtcctgttctgttagcttgtgtggcctaccacttcgcggctgagctgttgttgctcctaaacatttccacatcacagtaacagcacttacagttgaccggggcagatctagcagggcagacgttttatgaactgacttgttggaaaggtggggtcctatgacggtgccacattgaaagtcactgcgttcttcagtaaggcaattCAATGTCacgctatggagattgcatggctgtgctcgtttttatacacctgccagcaatAAGTGAAATGGctaaatccacaaatttgaagggctgtccacatacttttgtctaTATATTGTGTATCTGTGGATTAGGATGCATTAGTTAGGTTTTATAGATTGTGCATACTTTAGGGCTCCCAGTGAgcttagtcccaaatggcaccctatcctgtatagtgcaatacttttgccATTTGGCacgcacacaatgactacatcaaaaGCTTGTGTCTTTACaagcttgttggatgcatttgcagtatgTTTTGCCCAATATgaactgaatggtgaataatgtcTTGTACCATTTTGGAGTCAATTTTATTGTAAGAATAGATGTTTCTGATCACTTCTATATCCATGTGGAGGCTAcaatgattatggataatcatgaatgaattgtgGATAATTTAGGTTAGCATGTTTGGTTGTAGCCTCTGAACTGCATCTCACTcatcatgattttttttttcattactTTTCTTAATCATGTCATAAGGATTAATtgagaagtgttcagaaacaggAGTCATTTAAGAAAATTACTCAAGTCCTCATTCACCATTCAGTTACTATTGGGGGTAAAACGCAACCCAAACAAACTGTAAATGCATCCAATGACtttagtcacaagcttgatgttgcCAATGCAtgcaaggaatatgggaccaaaaacTAATATacgtttgactactttaatacactttAAGTGTATATGTCAAAATAGTTATGACTTCTTCACATGGGGGGGACTAGATACCTAGTGGTTTCATTTCTAATCAGTAAAATATTTATGAAAatccctcaaataaaaggtgccctagtctcaaatccaaaatgtggGAGTATAGAGACAAATCTAAAATCTTACTTATTTATATGGGCTGGAGTAAAATCTAATTTGGAATTTTAAGCAATTGGACATTACAAACTTTGTCCATGCACAACATTTAATAAAGCACTTAGAACCTTTTGAAAtctttgtttttgtttctttaaaaaaaaagcatACGATTTTAAAATTGACTTTATATAAGTTTACAGTTTAATGGGCTTTATACAACTTTTACTTTCAAAATATATATTCTTTATGTTCTGGTTTGAACACCAtccacaaatgtttttttttaatgttttcatttaaaaaataaacttgGGGAAAAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290919 lncRNA upstream 4250 39654256 ~ 39654503 (+) True G255349
TU290918 lncRNA upstream 5294 39653188 ~ 39653459 (+) True G255348
TU290916 lncRNA upstream 9852 39647819 ~ 39648901 (+) True G255346
TU290914 lncRNA upstream 11858 39646691 ~ 39646895 (+) True G255344
TU290829 lncRNA upstream 134729 39503531 ~ 39524024 (+) True G255262
TU290925 lncRNA downstream 1807 39670104 ~ 39670733 (+) True G255355
TU290927 lncRNA downstream 3010 39671307 ~ 39671526 (+) True G255357
TU290998 lncRNA downstream 118706 39787003 ~ 39787277 (+) True G255407
TU291027 lncRNA downstream 150043 39818340 ~ 39818548 (+) True G255433
TU291028 lncRNA downstream 151323 39819620 ~ 39819944 (+) True G255434
XM_021596867.2 mRNA upstream 37675 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA upstream 37675 39608170 ~ 39621078 (+) True LOC110519956
trnaf-gaa mRNA upstream 265040 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596859.2 mRNA upstream 444649 39171897 ~ 39214104 (+) False LOC110519950
XM_036974015.1 mRNA upstream 898263 38646298 ~ 38760490 (+) False LOC110519946
XM_021596883.2 mRNA downstream 38144 39706441 ~ 39709243 (+) False LOC110519963
XM_021596880.2 mRNA downstream 38144 39706441 ~ 39709441 (+) False LOC110519963
XM_021596877.2 mRNA downstream 38144 39706441 ~ 39709665 (+) False LOC110519963
XM_021596878.2 mRNA downstream 38144 39706441 ~ 39709665 (+) False LOC110519963
XM_021596879.2 mRNA downstream 38144 39706441 ~ 39709665 (+) False LOC110519963
TU290310 other upstream 814197 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1057887 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1217019 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1566019 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 1931415 37726948 ~ 37727338 (+) True G253299
TU292451 other downstream 771772 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 771772 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4583772 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4852122 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 6170624 45838921 ~ 45839480 (+) True G263547

Expression Profile