RNA id: TU297860


Basic Information

Item Value
RNA id TU297860
length 363
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G261862
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44318794 ~ 44319156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagggggaggagttgcagtctactgcagagatagcctgcaaagtaatgtcatactttccaggtccatacccaaacagttcgaactactaattttgaaaattactctctccagaaataagtctctcactgttgccgcctgctaccgacccccctcagctcccagctgtgccctggacaccatttgtgaattgatcgccccccatctagcttcagagtttgttctgttaggtgacctaaactgggatatgcttaacaccccagcagtcctacaatctaagctagatgccctcaatctcactcaaatcatcaaggaacccaccaggtacaaccctaactctgtaaacaagggcaccctcatagacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297858 lncRNA upstream 34 44318487 ~ 44318760 (+) True G261860
TU297734 lncRNA upstream 79291 44239177 ~ 44239503 (+) True G261739
TU297733 lncRNA upstream 79736 44238258 ~ 44239058 (+) True G261738
TU297715 lncRNA upstream 92559 44225953 ~ 44226235 (+) True G261725
TU297329 lncRNA upstream 110687 44205498 ~ 44208107 (+) True LOC110504116
TU297863 lncRNA downstream 1729 44320885 ~ 44321111 (+) True G261865
TU297868 lncRNA downstream 4150 44323306 ~ 44323542 (+) True G261870
TU297870 lncRNA downstream 6835 44325991 ~ 44326223 (+) True G261872
TU297886 lncRNA downstream 26843 44345999 ~ 44346321 (+) True G261888
TU297906 lncRNA downstream 48056 44367212 ~ 44367436 (+) True G261908
XM_036974162.1 mRNA upstream 110689 44075824 ~ 44208105 (+) False LOC110504116
XM_036974170.1 mRNA upstream 110689 44075824 ~ 44208105 (+) False LOC110504116
XM_036974177.1 mRNA upstream 127138 44075822 ~ 44191656 (+) False LOC110504116
XR_005045715.1 mRNA upstream 331836 43943124 ~ 43986958 (+) True LOC118956122
XM_021596938.2 mRNA upstream 423146 43876264 ~ 43895648 (+) True LOC110519997
XM_021596952.2 mRNA downstream 151015 44470171 ~ 44475272 (+) False LOC110520002
XM_021596954.2 mRNA downstream 151089 44470245 ~ 44475272 (+) True LOC110520002
XR_005051414.1 mRNA downstream 515355 44834511 ~ 44834565 (+) True LOC118964364
NM_001124435.1 mRNA downstream 559504 44878660 ~ 44903676 (+) True cd18
XM_021596956.2 mRNA downstream 584878 44904034 ~ 44930884 (+) False LOC110520005
TU297744 other upstream 66243 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 3866614 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 3866614 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 4650706 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 5474238 38843510 ~ 38844556 (+) True G254816
TU298041 other downstream 201263 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 1519765 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 1614963 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 1756328 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 1864978 46184134 ~ 46184804 (+) True G263859

Expression Profile