RNA id: TCONS_00029399


Basic Information

Item Value
RNA id TCONS_00029399
length 418
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_014900
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32048379 ~ 32150214 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCATATGCGAAGAGTAAAGGATCGCGGGCTCAGACTCACAGCAGCACCGGAGCGCTCGGGTaatgtgtgtgagtctgtgtgtacGGCACTGCGGCTCTTCTCCAGCCCGCTGTCATCACCTTTAAACACGACATGTTGTATGAGAGCCGCCGGGAGCTCGAGGAACCAGCGCAGATCAGATAAAGTGGAGCTCGGAGAAACAGCTGATCCGCGGATGCTCGTCTGAGGCAACAATCACCAGAGCCAAACAAGTGTTCAGGTAGGACCCACTTATTTGTTTGACTTTTTGCACAGTTTTTAATCATGCTTGTGGTTTTACAGAGGGTATTTGTTAACATATTTGAGATAAATATcccaagtaataataataataatataaagggTTCCCCTCATTTGGATTTTAATAGTaatagaca

Function

GO:

id name namespace
GO:0050868 negative regulation of T cell activation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0045121 membrane raft cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-586 Predicted to act upstream of or within intracellular signal transduction and negative regulation of T cell activation. Predicted to be located in membrane raft and plasma membrane. Predicted to be integral component of membrane. Orthologous to human PAG1 (phosphoprotein membrane anchor with glycosphingolipid microdomains 1).

Ensembl:

ensembl_id ENSDART00000151407

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029371 lncRNA downstream 1113290 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 1243854 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 1356447 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 1455219 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 1608450 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029413 lncRNA upstream 474645 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029429 lncRNA upstream 1108461 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 1120466 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 1632672 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 2038081 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00029395 mRNA downstream 36846 31956534 ~ 32042105 (-) True XLOC_014899
TCONS_00029394 mRNA downstream 178058 31878454 ~ 31900893 (-) True XLOC_014898
TCONS_00029393 mRNA downstream 276655 31797567 ~ 31802296 (-) True XLOC_014897
TCONS_00029392 mRNA downstream 313336 31743104 ~ 31765615 (-) True XLOC_014896
TCONS_00029391 mRNA downstream 371059 31593987 ~ 31707892 (-) True XLOC_014895
TCONS_00029401 mRNA upstream 322885 32472996 ~ 32487469 (-) True XLOC_014902
TCONS_00029402 mRNA upstream 338461 32488572 ~ 32493866 (-) True XLOC_014903
TCONS_00029403 mRNA upstream 345308 32495419 ~ 32500373 (-) True XLOC_014904
TCONS_00029404 mRNA upstream 355636 32505747 ~ 32518556 (-) True XLOC_014905
TCONS_00029405 mRNA upstream 421616 32571727 ~ 32600138 (-) False XLOC_014906
TCONS_00029389 other downstream 494550 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029381 other downstream 994978 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029380 other downstream 997700 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029373 other downstream 1071534 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029367 other downstream 1278988 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029400 other upstream 180402 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029412 other upstream 474645 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029414 other upstream 499556 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029434 other upstream 1222253 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 1681258 33831369 ~ 33834435 (-) False XLOC_014921

Expression Profile

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