RNA id: TU330410


Basic Information

Item Value
RNA id TU330410
length 211
lncRNA type intronic
GC content 0.44
exon number 1
gene id G291399
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69810427 ~ 69810637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttattgatgaagctgatgactgaggtggtgtattcctcaatgccattggattaatcccggaacatattccagtctctgctagcaaaacagtcctgctaacatgaatttcttttaactagggaaattgtgtcacttctcttgcaacagagtcagggtatatgcagcagtttgggccgcctggctcgttgcgaactgtgtgaagactatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330408 lncRNA upstream 5798 69804416 ~ 69804629 (+) True G291397
TU330402 lncRNA upstream 13323 69796864 ~ 69797104 (+) True G291391
TU330401 lncRNA upstream 14002 69796119 ~ 69796425 (+) True G291390
TU330399 lncRNA upstream 18687 69791540 ~ 69791740 (+) True G291388
TU330393 lncRNA upstream 26589 69783580 ~ 69783838 (+) True G291382
TU330412 lncRNA downstream 2096 69812733 ~ 69813237 (+) True G291401
TU330413 lncRNA downstream 2943 69813580 ~ 69814072 (+) True G291402
TU330415 lncRNA downstream 3503 69814140 ~ 69814368 (+) True G291404
TU330414 lncRNA downstream 6941 69817578 ~ 69817977 (+) True G291403
TU330422 lncRNA downstream 22113 69832750 ~ 69833055 (+) True G291411
XM_036975033.1 mRNA upstream 40781 69731759 ~ 69769646 (+) True LOC110504579
XM_036965146.1 mRNA upstream 78770 69712348 ~ 69731657 (+) True LOC110504569
LOC118964360 mRNA upstream 133764 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 169704 69634580 ~ 69640723 (+) False LOC110520479
XM_021597835.2 mRNA downstream 51257 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 51385 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 51385 69862022 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA downstream 51391 69862028 ~ 69867877 (+) False LOC110520485
XM_036975040.1 mRNA downstream 51392 69862029 ~ 69867876 (+) False LOC110520485
TU330321 other upstream 114591 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 180058 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1585121 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2048004 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2128305 67678862 ~ 67682122 (+) False G289486
TU330385 other downstream 51423 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 108545 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 139030 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 246903 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 766481 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile