RNA id: TU330387


Basic Information

Item Value
RNA id TU330387
length 2553
lncRNA type read_through
GC content 0.42
exon number 2
gene id G291376
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69871693 ~ 69946132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTGATTcacaatactgtgtgtgtgtgttcattagaTTTTTATAGATATCAAAAATTCTGTTTGGCTTCAAAGATTGTCTTttttaataaaaactatatgtagCATTCATATGATACTAAATGTCATCAAGCCCTGTGCAACTGCATTGCAAAAGAAGAGCTAGTGCAAATAAAGAcacatataaaataaatatacaacacacacattaatacatgtAAGATTCAAGCTATACAAAGACACTTTTTACCATGACAAATATTAAACACATTTCAAATAGATATTGTGCAAGTCTGTGTGTATATTTCCATACATAATGAAACACCAGACAGACTCAGAGACATACAATAGCACAGCATGAATGAGCAAAACACATAGACATCCAATCAAAGCATCTCACTGGCACCACATCAACAACAGCTGCTGCTGACTATTGCCCTTACAAAGCTGAATCAAAACCAAAGCGTGCTGGAAACGTGCAAAagtgtgagatggagagagagtggtaaGGCTAAAGCAACCGACTGCAGACAAAAGTCAAGAAGTGAAGTCAGGGGAGGTGCATCTACTACAGCCGAAAGTCGGACACTGATGTGGCTTTCCAACAGCAACGCTcagcacaacatggcagtgttgccatcATTTATAAAAGTTGTTCTTTGTAATATCAAAATAAACACGTCTCCAACCcccatatcacacactcacaaaatTAAATATATGCATGTAATATCAATTGGTGAGAGAGCCTCAAACAAATTCATttgtacatatctactgtattcagaccccttgactttttccacattttgttacattacagacttattaTAAAACggattttaaaaaacaattatAATTAATCTAcgcccaataccccataatgacaaagcaaaaacaggttttcagaaattttagcaaaaacagaaataccttatttccataagtcatctatacgtctttgctaggtaaagccccgccttatctcagctcacaggtcaccatagcaacacccaaccATAGCATGTtccccagcaggtatatttcactggtcatccccaaagccaacacttcctttggccgcctttccttccagttctctgctgccaatgactggaatgaattgcaaaaatgacTGAAGCTGGattcttatatctccctctctaactttaagcatcagctgtcagagcagcttactgtacctgtacacatcccatctgtaaataacacacccaactacctcattcccaaattgttatttatcctcttgctcttttgcaccccagtatccccacctccacatcatcatctgcacatctatcactccagtgttaatgctaaattgtcattatttttgCCTCTACagcatatttattgccttacctcactattcttctacatttgcacacactgtacattgatttttatattgtgttattgactgtacatttgtttatgtgtaactgtgttgttgtttttgtcgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctaccttgttaaataaaggtggaagaaaaacaattatgaccctttgctatgagactcgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggtgtccacctgtggtaaattcatttgattggacatgatttggagagacaaacacctgtctatataaggttccacagttgacagtgcatttcagagcaaaaaccaagccatgtggttgaaggaattgtccgtagaactccgagacaggattgtgatgagacacagatctggggaagggtgccaaaagaattctgcagcattgaaggtcccaagaacacagtggcctccataattattaaatggaagaagtttggaaccaccaagactcttcctagagctggctgccaggccaaactgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacccgatggtcactctgacagagctccagagttcctctgtggagattggagaaccttccagaaggttaaccacctctgcagcactccacaaaacaggcctttatggtagagtgaccagatggaagccactcctcagtaaaaggcacatgacagaccacttggagtttgccaaaaggcacctaaagactctcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagtgtcacgtcttgAGGACACCTGGCACCGTCCCTGCAGTGAAGCATGTTAGTGGtagcatcatgctctggggatgtttttcagaggcagggactgggagactagtcaggatcgagggaaagatgaacggagcacagagagatccttgatgaaaaccttctccagagcagaacaagtttctgaatgtctttgagtggcccagccagagcccggacttcaacCAAATCAAGCATCttcggagagacctgaaaatagctgtgcagcgatgctccccatccaatctgacagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330389 lncRNA upstream 357 69870856 ~ 69871336 (+) True G291378
TU330425 lncRNA upstream 33768 69837711 ~ 69837925 (+) True G291414
TU330422 lncRNA upstream 38638 69832750 ~ 69833055 (+) True G291411
TU330414 lncRNA upstream 53716 69817578 ~ 69817977 (+) True G291403
TU330415 lncRNA upstream 57325 69814140 ~ 69814368 (+) True G291404
TU330509 lncRNA downstream 25566 69971698 ~ 69971933 (+) True G291490
TU330521 lncRNA downstream 85869 70032001 ~ 70034765 (+) False LOC110520491
TU330526 lncRNA downstream 85869 70032001 ~ 70034765 (+) False LOC110520491
TU330529 lncRNA downstream 85869 70032001 ~ 70034765 (+) False LOC110520491
TU330516 lncRNA downstream 85919 70032051 ~ 70034765 (+) False LOC110520491
XM_021597836.2 mRNA upstream 1481 69862022 ~ 69870212 (+) False LOC110520485
XM_036975046.1 mRNA downstream 34136 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA downstream 34139 69980271 ~ 70034757 (+) False LOC110520491
XR_002472992.2 mRNA downstream 111251 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 111270 70057402 ~ 70070470 (+) False LOC110520493
XM_021597859.2 mRNA downstream 111278 70057410 ~ 70070470 (+) False LOC110520493
TU330385 other upstream 1481 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 175857 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 241324 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1646387 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2109270 67761737 ~ 67762423 (+) True G289517
TU330474 other downstream 3535 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 111408 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 630986 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 630986 70577118 ~ 70581089 (+) False LOC110520507
TU331619 other downstream 630986 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU114907 True 701 TUCP 0.48 1 CM030131.1 15866947 ~ 15867647 (-)