RNA id: TCONS_00029538


Basic Information

Item Value
RNA id TCONS_00029538
length 644
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_014986
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41401133 ~ 41405315 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCATAACGTCGAGTGTCCACGCTGTTCACAGAAACACAACATGTCAGAAAAGAAGCAAACAGTGGATTTGGGGCTTTTGGAGGAGGATGATGAATTTGAGGAATTCCCAGCAGAGGACTGGACGGGCCTGGATGAAGATGAGGATGCTCATGTTTGGGAAGATAACTGGGATGACGACAACGTAGAGGATGACTTTTCTAATCAGCTGAGGTAGGAGATGCATTATCAATGTATAAATTATGTATATGAAATACGGGGCATGCTTTATTGTTGCACTAAATAAGGAGTATACTAGTTTAATCTAACTTCACAGTATGCAATTCCTGGTAAACATTATGGTGTTCTAGTGTCTCTTATAATCTGCTAGCATATTAACTTTCTGTCAAGCCCACATTTTGTCTAAAGAATTTGGTGTGGTTAAACTAATTTAGAAGAAAACCCTCCCTAAGGGAACTAATAGTCCAATGGCTAACCGACATTCATGGTGGCCTCAAACCACATTCACAAACTTTACTATCTGTGAGGACTTGGCCCAAGTACATACAGGCATTTAATATGCTTACATAGATgtttaaaagtataaaatataagagtaagttgctatgttatATAGTTTATGCTTCCTATCAAGGTtattataat

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0043248 proteasome assembly biological_process
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0000502 proteasome complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-988 Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within mRNA export from nucleus and proteasome assembly. Predicted to be part of proteasome complex. Orthologous to human SEM1 (SEM1 26S proteasome subunit).

Ensembl:

ensembl_id ENSDART00000167772

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030331 lncRNA downstream 418447 40943904 ~ 40985308 (-) True XLOC_014981
TCONS_00030328 lncRNA downstream 418502 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00030332 lncRNA upstream 40724 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00029539 lncRNA upstream 40724 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00030333 lncRNA upstream 88907 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00030334 lncRNA upstream 107872 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030335 lncRNA upstream 318617 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00029533 mRNA downstream 31765 41290713 ~ 41371990 (-) False XLOC_014985
TCONS_00029534 mRNA downstream 31777 41352822 ~ 41371978 (-) True XLOC_014985
TCONS_00029532 mRNA downstream 190037 41190258 ~ 41213718 (-) True XLOC_014984
TCONS_00029531 mRNA downstream 203811 41190258 ~ 41199944 (-) False XLOC_014984
TCONS_00029530 mRNA downstream 334054 41039028 ~ 41069701 (-) True XLOC_014983
TCONS_00029540 mRNA upstream 65346 41470216 ~ 41472228 (-) True XLOC_014988
TCONS_00029541 mRNA upstream 110889 41515759 ~ 41518951 (-) False XLOC_014991
TCONS_00029542 mRNA upstream 111332 41516202 ~ 41518922 (-) True XLOC_014991
TCONS_00029543 mRNA upstream 436277 41841147 ~ 41991104 (-) False XLOC_014993
TCONS_00029544 mRNA upstream 436313 41841183 ~ 42045372 (-) False XLOC_014993
TCONS_00029535 other downstream 31777 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 622484 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 767064 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 1217492 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 2200020 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029546 other upstream 768244 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1190398 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1273494 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 1624512 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 2644777 44049647 ~ 44062549 (-) False XLOC_015032

Expression Profile

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