RNA id: TCONS_00029541


Basic Information

Item Value
RNA id TCONS_00029541
length 936
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_014991
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41515759 ~ 41518951 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTAGATTTACTTCCGTTGCTCTGAAGCGGTTGTTGAACAACAGAACATGTCTGAAACAAACATGGAGGAGACAGTAGATCAAGCTGCAAACAGTAGAACTATTTCTCTGCCTATCTCCAGGGTGCGATTAATCATGAAAAGTTCTCCCGATGTGTCCTGTATAAACCAAGACGCTCTTTTCTTGACGACAAAAGCAACGGAGCTTTTTGTCCAGCACTTGGCTCTTTCCTCGTATGAAAACGGACCCAGTAAAGACACAAACACCCTGTCCTACAGTGATCTGGCTGATACGGTAGAGGAGACGGAAACCTTTCAGTTTTTAACTGACATCCTTCCTAAGAAAATCTTGGCCAGAGATTATCTCAAGACGCTGGAAGAAATGGAAAAAGAGGATGACAACATGTAGTGATGGATAGCAAGTCAGAGGAAATCACTGCTAACTGGTCCTGTCAACTTCCTCACTAAAAATCACACAACGCTGTCTTACACATCAGGACATTTCACCCAAAGAATAGTGTTTTTACACCTGGTTTGGAGAGGTTATGTACACGTTATACTTGATGTAGTCACTGTGTTGTTTTTACATCTACTTACACTATGCTAAGTCTAAATAGACATCAACCACTGAGTACTGGAAAGCAGAATCATTTCTGTTCATTACTGCTCGACACCATGAGTCGTGCGTATAGAAAAGATCTTGTTCATTCCTGACAGTCCATTCAATGTGAAATCAGAGCTTGCTCCTAAATGCATCTCTCAGGGTTTCGGGTGTGTTTTAGAGACATGTTTGATTGCATTTTTAACCACGTCACTGCTGAGGAGGATAAAAGTTAGGGTTTCTATAGTGTACTGtgtatagttttaaaaaaaaattcttgaacAGTTTGTGTTTGTATTTGAATAAATACGTTTGTTGATTATTTTGTGTTCACGG

Function

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0008623 CHRAC cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050227-18 Predicted to enable protein heterodimerization activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be part of CHRAC. Predicted to be active in nucleus. Orthologous to human CHRAC1 (chromatin accessibility complex subunit 1).

Ensembl:

ensembl_id ENSDART00000062080

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030334 lncRNA downstream 2501 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030333 lncRNA downstream 9275 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00029539 lncRNA downstream 46780 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00030332 lncRNA downstream 46801 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00030331 lncRNA downstream 530451 40943904 ~ 40985308 (-) True XLOC_014981
TCONS_00030335 lncRNA upstream 204536 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00030336 lncRNA upstream 204536 41723487 ~ 41730979 (-) True XLOC_014992
TCONS_00029545 lncRNA upstream 487580 42006531 ~ 42045274 (-) True XLOC_014993
TCONS_00029556 lncRNA upstream 886470 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00029797 lncRNA upstream 999626 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029540 mRNA downstream 43531 41470216 ~ 41472228 (-) True XLOC_014988
TCONS_00029537 mRNA downstream 110444 41402072 ~ 41405315 (-) False XLOC_014986
TCONS_00029536 mRNA downstream 110572 41401133 ~ 41405187 (-) False XLOC_014986
TCONS_00029538 mRNA downstream 110889 41403755 ~ 41404870 (-) True XLOC_014986
TCONS_00029533 mRNA downstream 143769 41290713 ~ 41371990 (-) False XLOC_014985
TCONS_00029543 mRNA upstream 322196 41841147 ~ 41991104 (-) False XLOC_014993
TCONS_00029544 mRNA upstream 322232 41841183 ~ 42045372 (-) False XLOC_014993
TCONS_00029547 mRNA upstream 695983 42214934 ~ 42249597 (-) True XLOC_014995
TCONS_00029548 mRNA upstream 716788 42235739 ~ 42238440 (-) False XLOC_014996
TCONS_00029549 mRNA upstream 716793 42235744 ~ 42238003 (-) True XLOC_014996
TCONS_00029535 other downstream 143781 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 734488 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 879068 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 1329496 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 2312024 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029546 other upstream 654163 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1076317 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1159413 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 1510431 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 2530696 44049647 ~ 44062549 (-) False XLOC_015032

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_02195667_02196307.mRNA True 891 mRNA 0.37 3 CI01000054 2195667 ~ 2196853 (+)