RNA id: XM_021600916.2


Basic Information

Item Value
RNA id XM_021600916.2
length 2766
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110522488
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31169651 ~ 31182712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGAAGCACAGTTTTGGAATAGTCCAGACGGTTCTAGAAGCTGAGGATTTCTCGAAGACACTCAGCTGGTATAAAACCTTGCcagttgtcctcctctccccatctttggCGTTagctggctgggttgtgtttggtCAGGAACCAACTTCTGAAGAAGAGTACAGGGACATTTTCATCCACAGTAAGATGCCTGAAGCCCATGACGCTCCgatggaggaggaggcagagaccTTTGCCTTCCAGGCTGAGATCGCCCAGCTGATGTCGCTGATCATCAACACCTTCTACTCCAACAAAGAGATCTTCCTTAGGGAGCTCATCTCCAACTCCTCAGATGCTCTGGACAAAATCCGCTATGAGAGCCTGACAGACCCGACCAAGATGGACTCTGGCAAGGACCTGAAGATCGAGGTCATTCCCAACAAGGAGGAGCGCACCCTGACCCTGGTTGACACCGGCATCGGCATGACCAAGGCCGACCTGATAAATAACCTTGGAACCATCGCCAAGTCTGGCACCAAGGCCTTCATGGAGGCCCTGCAGGCTGGAGCTGACATCTCTATGATCGGGCAGTTCGGTGTGGGTTTCTACTCCGCCTACCTGGTGGCTGAGAGGGTGACTGTCATCACCAAGCACAACGATGATGAGCAGTACATCTGGGAATCCTCTGCTGGCGGATCCTTCACCGTCAAAGTCGACACGTCAGCTGAGTCTATTGGTCGTGGCACCAAGGTGATTCTGTACCTGAAGGATGACCAGACAGAATATTGTGAGGAGAAGCGGGTCAAAGAAATCGTGAAGAAGCACTCCCAGTTCATCGGATACCCCATCACACTCTTTGTGGAGAAGGAGCGTGACAAGGAAGTGAGTGATGatgaggcggaggaggaggaggaggaggagaagaaagatggggaaggagaggaggacaaacCTGATATCGAGGACGTAGGCTCGGACGAGGAGGATGACCATGATCATGGCCATGACGGCGCATGTGgggacaagaagaagaagaagacgaagaagatcAAGGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACCAAGCCCCTTTGGACTCGTAACCCTGATGACATCACCAACGAGGAGTACGGAGAGTTCTACAAGAGTCTGACCAACGACTGGGAGGAACACCTGGCTGTCAAGCACTTCTCAGTGGAGGGCCAGCTGGAGTTCCGTGCCCTGCTCTTTGTGCCTCGCCGTGCGCCCTTTGACCTCTTtgagaacaagaagaagaagaacaacatCAAGCTGTACGTCAGGAGGGTCTTCATCATGGACAACTGTGACGATCTGATCCCTGAGTACCTCAACTTCATCAAGGGTGTGGTGGACTCTGAGGATCTCCCCCTGAACATCTCCAGAGAGATGCTGCAGCAGAGCAAGATCCTCAAGGTGATCCGCAAGAACCTGGTCAAGAAGTGTATAGAGCTTTTCACAGAACtctcagaggacagagagaactaCAAGAAGTACTACGAGCAGTTCTCCAAGAACATCAAGCTGGGTATCCATGAGGACTCTCAGAACCGTAAGAGGCTGTCAGACATGCTGCGCTACTACACCTCAGCCTCAGGGGACGAGATGGTCTCCCTGAAGGACTACGTCACACGCATGAAGGACACCCAGAAACACATCTACTACATCACTGGTGAGACCAAAGACCAGGTGGCCAACTCCGCGTTCGTGGAGCGCCTTCGTAAGGCTGGCCTGGAAGTGATCTACATGATTGAGCCCATTGATGAGTACTGTGTCCAGCAGCTGAAGGAGTACGATGGCAAGAACCTAGTCTCTGTGACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGACATGAAGAAGAGACAAGAAGAGCAGAAGTCTCAGTTTGAGAACCTCTGCAAGATCATGAAGGACATCCTGGAGAAGAAAGTTGAGAAGGTGACAGTGTCCAACCGCCTGGTCTCCTCCCCATGCTGTATCGTGACCAGCACCTACGGCTGGACGGCCAACATGGAAAGGATCATGAAGGCCCAGGCCCTGAGGGATAACTCCACCATGGGCTACATGGCTGCCAAGAAACACCTAGAGATCAACCCAGACCACCCCATTGTGGAGACCCTGAGGCAGAAGGCAGAGGCTGATAAGAATGATAAGTCTGTGAAGGACCTGGTCATTCTGCTGTTTGAGACGGCTCTACTGTCCTCTGGGTTCACCTTGGATGACCCTCAGACACACTCCAACCGAATCTACCGGATGATAAAGCTAGGCCTGGGTATTGATGAGGATGAGCTGACCCCTGAGGAGCCAACTTCAGCCCCCATCGAGGACATGCCTCCACTGGAGGGAGATGAGGATACATCCAGGATGGAGGAGGTTGACTAGACCagctgctgtgttactgtaactaTGGCAGTTAGCTTTGGCACTAGTAGTGTTGACAGGATGAATTTGTTTGTTCATAACCCtggaatgccccccccccccttgccctCTTTCTTGATCCAAAATACCTTGACCCGCATTGACCACATGCAGTTCAGATGAATTCCCCTAAATGTTAAAATCTTTTGAAGAAAAACAAGAGCCtgttgacacttttttttttgtatcttGAATTATATCAAGCATTTTTGTATTTGACATTCCAATGTTATTTTGTGTTGACTGTATGACTTGACTGTAAATATCTTCTCGAATTGATACGAACTTCAAATGTTGGGGACCCAAAAAATAAAAGTACCACGTTAACCCATTG

Function

GO:

id name namespace
GO:0045429 positive regulation of nitric oxide biosynthetic process biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0042470 melanosome cellular_component
GO:0030018 Z disc cellular_component
GO:0005524 ATP binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387110 lncRNA upstream 27889 31147393 ~ 31147679 (+) True G342084
TU387109 lncRNA upstream 28550 31146777 ~ 31147018 (+) True G342083
TU387108 lncRNA upstream 29665 31145542 ~ 31145903 (+) True G342082
TU387103 lncRNA upstream 36004 31139317 ~ 31139564 (+) True G342077
TU387102 lncRNA upstream 36576 31138789 ~ 31138992 (+) True G342076
TU387126 lncRNA downstream 15894 31198606 ~ 31199374 (+) True G342099
TU387512 lncRNA downstream 115103 31297815 ~ 31298040 (+) True G342448
TU387594 lncRNA downstream 177788 31360500 ~ 31360748 (+) True G342525
TU387601 lncRNA downstream 190686 31373398 ~ 31373602 (+) True G342532
TU387602 lncRNA downstream 194180 31376892 ~ 31377148 (+) True G342533
XM_021600917.2 mRNA upstream 471 31169690 ~ 31175097 (+) False LOC110522488
XM_021600906.2 mRNA upstream 352509 30816416 ~ 30823059 (+) False LOC110522477
XM_021600904.2 mRNA upstream 352509 30817802 ~ 30823059 (+) False LOC110522477
XM_021600907.2 mRNA upstream 352509 30817802 ~ 30823059 (+) True LOC110522477
XR_002473325.2 mRNA upstream 377881 30796219 ~ 30797687 (+) True LOC110522479
XM_021600920.2 mRNA downstream 4514 31187226 ~ 31227364 (+) False ppp2r5cb
XM_021600919.2 mRNA downstream 4518 31187230 ~ 31227364 (+) False ppp2r5cb
XM_021600921.2 mRNA downstream 21636 31204348 ~ 31227364 (+) True ppp2r5cb
XM_021600925.2 mRNA downstream 209467 31392179 ~ 31401929 (+) False slc25a29
XM_036976092.1 mRNA downstream 209467 31392179 ~ 31401929 (+) True slc25a29
TU384729 other upstream 1838629 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 2008572 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 2260029 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 2316413 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 3574012 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 199114 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 235243 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 268421 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 603153 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1512274 32694986 ~ 32704371 (+) True G343958

Expression Profile