RNA id: XM_021600921.2


Basic Information

Item Value
RNA id XM_021600921.2
length 1886
RNA type mRNA
GC content 0.51
exon number 14
gene id ppp2r5cb
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31187226 ~ 31227364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCCTCCAACTGCAGCAGAGTTTCATTTTCTGCTCAGAGTGTTTGCTGTTAAAATGGAGGCTGGTTCCTCGCCTTAGCCTGtgctaccctctcctctaccccagCCCTTAGATGTTGACAGGCACTAGTGCTGCCAGCGTGATGGTTCTGGATGCACCGAGCTCAAATGGGCCTTTTCAGCCCGTGGCCCTAATGCATTTCAGAGaTGTCCCTCCGGCGGAGCAGGAAAAGTTGTTTGTCCAGAAGCTGCGTCAGTGCTGCGTCCTGTTTGACTTTCTGTCGGACCCTCTGAGCGACCTGAAATGGAAGGAGGTGAAACGGGCAGCGCTCAGCGAGATGGTGGAGTACATCACCCACAACAGGAACGTCATCACAGAGCCCATCTACCCAGAGGTGGTGCACGTGTTTGCAGTGAACATGTTCAGGACATTGCCTCCATCATCCAACCCCACAGGGGCTGAGTTTGACCCAGAGGAGGATGAGCCCACTCTAGAGGCCGCGTGGCCACACCTCCAGCTCGTCTATGAGTTCTTCCTCCGGTTTCTGGAGTCTCCAGACTTTCAACCAAATGTGGCCAAGAAGTATATCGACCAGAAATTTGTAATGCAGCTATTAGACCTGTTTGACAGTGAAGACCCTAGGGAAAGGGACTTTCTAAAGACCACTCTGCATCGCATCTACGGAAAGTTCCTGGGCCTGAGAGCGTACATCAGGAAACAGATCAATAACATATTCTATAAGTTCATTTATGAAACAGAACGTCATAACGGAATAGCAGAGTTATTggaaatattaggaagCATTATCAATGGCTTTGCCTTACCGTTGAAAGAGGAGCACAAGATTTTCCTGTTGAAAGTGTTGCTGCCTTTACACAAAGTCAAGTCCCTTAGTGTCTATCACCCACAGCTGGCTTATTGCGTGGTGCAGTTTCTAGAGAAGGACAGCACTCTCACAGAACCGACGGTGATGGCTCTGTTGAAGTACTGGCCGAAGACACACAGTCCAAAGGAGGTGATGTTCCTCAATGAGCTGGAGGAAATCCTGGACGTCATCGAACCCTCTGAGTTCGTCAAGGTCATGGAGCCTCTCTTCAGACAGCTGGCCAAGTGTGTGTCCAGCCCTCACTTCCAGgtGGCAGAGAGAGCGCTGTACTACTGGAACAATGAGTACATCATGAGTTTGATCAGTGACAATGCTGCCAGGATCCTCCCTATCATGTTCCCCTCGCTCTACCTCAACTCCAAGACCCACTGGAACAAgacGATCCACGGTCTGATATACAACGCCCTGAAGCTCTTCATGGAGATGAACCAGAAGCTGTTTGATGACTGCACACAGCAGttcagaacagagaagaacaaagagaAGGCcaagtggaaagagagagaagaggcgtGGGTGAAGATTGAAAATCTGGCCAAGTCCAACCCTCAGTTCCTGGTGTATGTGGACCCGTCAGACCTGGGTAGTCCTATGGAGACAGACGGACCTATGATGGAGGATGTTAACATCTTGAAGAAGACCATAGCGGAAGAAGCCACACAGCTCCAGAGGAACGAGCGCAAGGAGCGTCCGCTGGTCAGGAGGAAGTCTGAGCTGCCTCAGGACATCTCCACCGTCAAGGCCCTGGAGACGCACCGGAGGGCCAATGATATGGTCACACCACACGACGGACACTAAAGACACACGCACGTACACGAACAAACACgtacagacagtctctctctctcacacacacacacgcacgtacagacagtcacacacacagacgtacagacaggctctctctctcacacacacacacgcacgtacagacagtcacacacacagacgtacagacaggctctctctctcacacacacacacacgtacagacagtcg

Function

GO: NA

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387126 lncRNA upstream 4974 31198606 ~ 31199374 (+) True G342099
TU387110 lncRNA upstream 56669 31147393 ~ 31147679 (+) True G342084
TU387109 lncRNA upstream 57330 31146777 ~ 31147018 (+) True G342083
TU387108 lncRNA upstream 58445 31145542 ~ 31145903 (+) True G342082
TU387103 lncRNA upstream 64784 31139317 ~ 31139564 (+) True G342077
TU387512 lncRNA downstream 70451 31297815 ~ 31298040 (+) True G342448
TU387594 lncRNA downstream 133136 31360500 ~ 31360748 (+) True G342525
TU387601 lncRNA downstream 146034 31373398 ~ 31373602 (+) True G342532
TU387602 lncRNA downstream 149528 31376892 ~ 31377148 (+) True G342533
TU387603 lncRNA downstream 149830 31377194 ~ 31377554 (+) True G342534
XM_036976090.1 mRNA upstream 21636 31169651 ~ 31182712 (+) False LOC110522488
XM_021600916.2 mRNA upstream 21636 31175568 ~ 31182712 (+) True LOC110522488
XM_021600917.2 mRNA upstream 29251 31169690 ~ 31175097 (+) False LOC110522488
XM_021600904.2 mRNA upstream 381289 30817802 ~ 30823059 (+) False LOC110522477
XM_021600925.2 mRNA downstream 164815 31392179 ~ 31401929 (+) False slc25a29
XM_036976092.1 mRNA downstream 164815 31392179 ~ 31401929 (+) True slc25a29
XR_005051520.1 mRNA downstream 181924 31409288 ~ 31412134 (+) False LOC110522495
XM_021600924.2 mRNA downstream 191102 31418466 ~ 31422057 (+) False LOC110522493
LOC110521075 mRNA downstream 195453 31422817 ~ 31455326 (+) False LOC110521075
TU384729 other upstream 1867409 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 2037352 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 2288809 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 2345193 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 3602792 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 154462 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 190591 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 223769 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 558501 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1467622 32694986 ~ 32704371 (+) True G343958

Expression Profile