RNA id: XR_005051520.1


Basic Information

Item Value
RNA id XR_005051520.1
length 1882
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC110522495
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31408651 ~ 31412134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTATGCTCCTATAATCTGAATAAAATCTGTAATGATATTAAAGTTGAATATCAAACCTGATACTTTCTCCTGATATCAGTGATTGGTGAACAAGCATACAGCTCTCTACTGTATTTGTCTGATGATGAAGAGTTATATAAAAGAGGATGTTCTTCTACTGATCTAGATATTAAAGACAAGGGCACTGAAGATGGTGATGTCATCACCACAGTCCCAGGTTAAAAAAAAACTCCATCAGTATGATGTgtgcagatatactgtagtacaccTTCCATGTGCCATCTTGATATGTAGAAGTTAGCAACGTTTCTTAAATGTTGGGTCAGGGTTGGTACCTTTAACGGCTTGAGACTGAGAATAGAAAAtagatgtatagaatcaatctttaggatgtttttaacataaatcttcaataaagttccaaccgaagaattcctttgtcttcagaaatgcaatgaaaTGCAGGTTGCGCTCACGTGAATGCGCGAGACTGAGCTCgtggctgctggcagacctctgactcaatcccctctcattcacccccacatcacagtagaaccatcaaacaaggttctaaagactgttgacatctagtggaagcctttggaagtgcaagatgaccccatagacactgtgtattcgataggGTACCAGTAATGCTGTTAAGTTGCCCATCAGTCACATCATGCTCTTTGTGACACTGACCATCATGGCTGCCATAGTCACTATTCACACAAGGAGGATCCGCCCACCCAAGGCTCTGCCCCCACAAGCAGAAGAAGCCTCTGGTATGGAGATTCATGTCCTGGAGGAATGACCCCTTGTTCCTCACTCTTCTCCCTGTGCTGGACTAAGACTTTCAAACTGTCTGTGTTTTTATTGATTAAGAGGACATTATACATGTTTTTTAAAGCTGATGTTCATCTATGATAGAGTAGAGTGTGTTGGAAGATGTATTTATAGTTGTATTTTCAACTTTTAGTATCTTTAGTATCTATTTAACATATTTGTTGTTGCATGCAGTAGGGGTGATGACATCACTGAAGCAACACATGGTCTATGTGAATGATAAGTTTGTTTTTTCCCTGTCCATTATGAAGGAAGTCAGCAAAGAGACATTCAGATTTTGTTTATCCATATGTTTTTTCCtaacctattttttttttatgaacacAATGCTTTTCTAACGTTTAAATTCATTTATGAAACAGTTTTTAAATAAACGATTAAAAATGTATTATGTCTAACTCtttgtcagtacagtacagaggttttttttttactatacaCTTCCAcaatacagtagcctacacagtTTTTAGTTTTTTCACCTTTACCTGCTGCTGAATTTCATGTCGGCCTGGTGGAGCGTTCCTGGCCACTAGGGGCCCCCCGAAACCAATTTAAAAAGTAAACCCAGTGTCTCAAcatactgttgagagttagaatagtagaatacacaaggtgaaaGTTTGACATTTTAGTTGTGCATCAttagtttttctcttgttatgttaGTCAATGACAGTCACTAAATttgccatgtcagctaacaatttttagattTGTAAATGAGTCTAGCCAGCTTTCTAATCTTGTAGTAATCATGTCCAAATACCGACTGGGCACGCAGGGCAAATGCCagggggccctgacctccagggggcttGTATTGACTTTGTTAGTCATTCTTACTCAGATATCAtgagtcatggcaaaatgtgcagaattgtCTTTAAAAATTCAAAAATGAATCTCTGCCCCATGGAAAcatttgtagaattgcatgacattTTTTATAAAATAGCAACATCTtgtctctgccccatgacaaaatgtatgCAACGGCCAAAATCTTGTTTAAAAACTGGAACATTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387582 lncRNA upstream 2026 31405886 ~ 31407262 (+) False G342515
TU387583 lncRNA upstream 2195 31405886 ~ 31407093 (+) True G342515
TU387580 lncRNA upstream 2437 31405040 ~ 31406851 (+) False G342515
TU387581 lncRNA upstream 2437 31405886 ~ 31406851 (+) False G342515
TU387610 lncRNA upstream 23487 31385544 ~ 31385801 (+) True G342540
TU387625 lncRNA downstream 9053 31421187 ~ 31422086 (+) True LOC110522493
TU387634 lncRNA downstream 19806 31431940 ~ 31432315 (+) True LOC110521075
TU387637 lncRNA downstream 25124 31437258 ~ 31437485 (+) True G342564
TU387644 lncRNA downstream 38482 31450616 ~ 31450904 (+) True G342570
TU387648 lncRNA downstream 47552 31459686 ~ 31459901 (+) True G342574
XM_021600925.2 mRNA upstream 7359 31392179 ~ 31401929 (+) False slc25a29
XM_036976092.1 mRNA upstream 7359 31392179 ~ 31401929 (+) True slc25a29
XM_021600920.2 mRNA upstream 181924 31187226 ~ 31227364 (+) False ppp2r5cb
XM_021600919.2 mRNA upstream 181924 31187230 ~ 31227364 (+) False ppp2r5cb
XM_021600921.2 mRNA upstream 181924 31204348 ~ 31227364 (+) True ppp2r5cb
XM_021600924.2 mRNA downstream 6332 31418466 ~ 31422057 (+) False LOC110522493
LOC110521075 mRNA downstream 10683 31422817 ~ 31455326 (+) False LOC110521075
LOC118964493 mRNA downstream 43880 31456014 ~ 31459259 (+) True LOC118964493
XM_036976093.1 mRNA downstream 58014 31470148 ~ 31505600 (+) True LOC110522497
XM_036976097.1 mRNA downstream 195731 31607865 ~ 31623080 (+) True LOC110521077
TU387608 other upstream 26539 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2072349 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 2242292 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 2493749 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 2550133 28858716 ~ 28859155 (+) True G339660
TU387623 other downstream 5821 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 38999 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 373731 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1282852 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 2059918 33472052 ~ 33486197 (+) False LOC110521085

Expression Profile