RNA id: XM_036976093.1


Basic Information

Item Value
RNA id XM_036976093.1
length 2319
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110522497
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31470148 ~ 31505600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGCTGCTGCGTTCCATTGAAGAACTGAGGAGGTATCAACCACGCGCAGTGCCTTTGCAGCAATCCAGTCCACACAGAACGGGAGTGATATCGGTTAGTTGTTGAAATACGCAGACATTTCCTCCTGCTGACTGCAAGCCACCGACCACGGTACAGTCTTCCCCGGCCTCCCAGTAGGATCTATTCTTTCCCGTTGGAGACCAACTCCACCCCATACAGCCAGTAGCCATGGCTGAAGACTTGGACATGCGCAATGAGCTGTCGGATATGCAGCAACGCGCCGACCAGCTTGGAGATGAGTCACTGGAGAGCACTCGTCGTATGCTACAGCTGGTGGAAGAGAGTAAAGATGCTGGTATCAGGACCTTGGTTATGCTGGATGAGCAAGGAGAGCAAATGGAGCGCATCGAGGAGGGAATGGATCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAGCATTCTGTGGTCTTTGCTCCTGTCCTTGTAACAAGATGAAGAGTGGAGGCAGCAAGGCTTGGGGGAACAACCAGGATGGAGTGGTGGCCAGCCAGCCTGCCCGCGTGGTGGACGAACGCGAACAGATGGCCATCAGTGGAGGATTCATccgcagGGTAACGGATGATGCCAGGGAAAATGAGATGGATGAGAACCTGGAGCAGGTGGGAGGCATCATCGGTAACCTGCGCCACATGGCCCTGGATATGGGCAACGAGATCGACACCCAGAATCGCCAGATCGACAGGAtcatggagaagGCTGATTCCAACAAGACCAGGATTGATGAAGCCAACCAGCGGGCCACAAAGATGCTGGGCAGTGGCTAAGCTCCCAGAGCACGTTGCTTCTCCCGCAAGCGCAGTTTGTCACAAGGCGCAAACATGCTTTTATCATGGTATTTACCTTCTAGGTTTGCACACATGCACATATCACCTCCCCCCATTGTAAATGTTGTTATGTGTATTGTCTGTCTCGCTTTTTCAATGATTGTCCTCGTAAACAAAAGTATTTCTTATACTCCGTATCATTCTTTCCAAAGGTTGTATATAGTGCTGACTCGATGGCTCTAGCTCACTTGTGAAGTTTTTATTCTCTTTatcaaatatatataaatatatatatgatgtatatattatatatatatcatatatatgtATAAAGGTACACTGCTGGATAACAAGTATAATAGGAATGCTATACAAGCTGTTTTTCCTTTTCAGTATATCAGTATTGTCTTAGTAAAACTGTGTCATTCCATCAGCTGCTGTCATGCTCCTTATTTTGATGTTGTCATGACGAATGAAGAAGAGGAAACAAACAAGATGATAACAAACGATAGTAAATTCAAAAAGCACTTACGTACAGTCACTGTCTTTGGTTCCTTTCCCTCACCGCAATCATCATGAGTTACTGTTTAGACAATGTGCAACTAGATTTGCTGTAATAGACATTGCATTCCAAGTGATGTGAATTGTGCGTTCTGCATGACAAATGGTAGATTTTAGAGTCATATACATAAAACCTgtcttaaaaatatataaaaacaataACATGGCAGTAGCAAAGTTGACAAAAGCATGCTCAGTATTAGGACACAGTTGAACGTTCCATACTCTCCTGCAAGTTTGCAATAGTGCCACTATTCCTGTCAAAATATATTTACAGACTGTGACCATCGTTGTAAAATAATGCAAAATGATCTTAACGTGAAGAGATGATGATGGAAGAATGAGGATGTGGCTGTAACCGCAAAAAAATGATGTTTTTTTCTAAATGAATATGCAGTTCGGTGAAGATATGGAATACGTGCTGAAGGGTGAGCTACTGGTTGTGTGTTGTATCATAGATTTTGGATGCTCTGAAAAAATGAACAAATTACACATTGTTTGCAATGTAAAGCAAAGACGCGTATTTCTGAGAGACCTTACTTTTATAAGAAGACTGTATCCTGTTAGTTTAATCTCCCCGTGTGGTTTGTTATTGGTCAAATAATAATGATAACTTAATAAAATGaatatcataataataatattgttTTGAAACAAAAAATGACATACAAAAGTTTTGTTTGCTTCTGTACTTTTAGAGCTATGCACACCAAATCACCAAGATGTTGAGTAGTTAGAATAATATGATGAAGAAATACCTTCTCTGAATGACACAATAGATTCAACTGTGAGATTGATGTCCTCAAAACGCATGTGATATTCAAACTCCCTCTGTATCCTGTCAGTTTGTGAAGTCGTGGAACATTTTGTAGCTAGCTGAATTGATTAAAAGTAATAAACCCTATTCTCTGTG

Function

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0031201 SNARE complex cellular_component

KEGG:

id description
K18211 SNAP25; synaptosomal-associated protein 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387652 lncRNA upstream 6194 31463077 ~ 31463954 (+) True G342576
TU387648 lncRNA upstream 10247 31459686 ~ 31459901 (+) True G342574
TU387644 lncRNA upstream 19244 31450616 ~ 31450904 (+) True G342570
TU387637 lncRNA upstream 32663 31437258 ~ 31437485 (+) True G342564
TU387634 lncRNA upstream 37833 31431940 ~ 31432315 (+) True LOC110521075
TU387684 lncRNA downstream 166 31505766 ~ 31505975 (+) True G342596
TU387686 lncRNA downstream 2908 31508508 ~ 31508737 (+) True G342598
TU387687 lncRNA downstream 3672 31509272 ~ 31509570 (+) True G342599
TU387702 lncRNA downstream 22360 31527960 ~ 31528423 (+) True G342613
TU387705 lncRNA downstream 30360 31535960 ~ 31538846 (+) False G342615
LOC118964493 mRNA upstream 10889 31456014 ~ 31459259 (+) True LOC118964493
LOC110521075 mRNA upstream 14822 31422817 ~ 31455326 (+) False LOC110521075
XM_021600924.2 mRNA upstream 48091 31418466 ~ 31422057 (+) False LOC110522493
XR_005051520.1 mRNA upstream 58014 31409288 ~ 31412134 (+) False LOC110522495
XM_021600925.2 mRNA upstream 68219 31392179 ~ 31401929 (+) False slc25a29
XM_036976097.1 mRNA downstream 102265 31607865 ~ 31623080 (+) True LOC110521077
XM_036976106.1 mRNA downstream 127068 31632668 ~ 31746462 (+) False LOC110521078
XM_036976098.1 mRNA downstream 127068 31632668 ~ 31749603 (+) False LOC110521078
XM_036976099.1 mRNA downstream 127068 31632668 ~ 31749603 (+) False LOC110521078
XM_036976100.1 mRNA downstream 127068 31632668 ~ 31749603 (+) False LOC110521078
TU387645 other upstream 18672 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 50892 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 87399 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2133209 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 2303152 29166518 ~ 29166996 (+) True G339830
TU387844 other downstream 280265 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1189386 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1966452 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1971093 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 2046527 33552127 ~ 33554003 (+) False G344647

Expression Profile