RNA id: TU387687


Basic Information

Item Value
RNA id TU387687
length 299
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G342599
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31509272 ~ 31509570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacgaccttagactgggggCGAAGATTTACgtcccaacaggacaatgaccccaagcatacagccaaaacAATGTTGGAATGGCTTAGGAACAAGAATGTGAACGTCCTTGAGTAGTCCAGCCAAAGCTCAGACTTGAATCCCATCGAAGCTCACAATCTAACTTTtcctgcagtgggctaaatcagggtcacagagtgtttcttggtagttgtaacgctcaatgagtgaataggtgtggagtcaggcgcagagagcaaaggatgcgggaaaaacacgctttaatgtccagaAATAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387686 lncRNA upstream 535 31508508 ~ 31508737 (+) True G342598
TU387684 lncRNA upstream 3297 31505766 ~ 31505975 (+) True G342596
TU387682 lncRNA upstream 5656 31503083 ~ 31503616 (+) True G342595
TU387672 lncRNA upstream 8761 31499318 ~ 31500511 (+) True G342593
TU387679 lncRNA upstream 9524 31498291 ~ 31499748 (+) False G342593
TU387702 lncRNA downstream 18390 31527960 ~ 31528423 (+) True G342613
TU387705 lncRNA downstream 26390 31535960 ~ 31538846 (+) False G342615
TU387706 lncRNA downstream 26390 31535960 ~ 31538846 (+) False G342615
TU387707 lncRNA downstream 26390 31535960 ~ 31538846 (+) False G342615
TU387709 lncRNA downstream 26390 31535960 ~ 31538846 (+) False G342615
XM_036976093.1 mRNA upstream 3672 31470148 ~ 31505600 (+) True LOC110522497
LOC118964493 mRNA upstream 50013 31456014 ~ 31459259 (+) True LOC118964493
LOC110521075 mRNA upstream 53946 31422817 ~ 31455326 (+) False LOC110521075
XM_021600924.2 mRNA upstream 87215 31418466 ~ 31422057 (+) False LOC110522493
XR_005051520.1 mRNA upstream 97138 31409288 ~ 31412134 (+) False LOC110522495
XM_036976097.1 mRNA downstream 98295 31607865 ~ 31623080 (+) True LOC110521077
XM_036976106.1 mRNA downstream 123098 31632668 ~ 31746462 (+) False LOC110521078
XM_036976098.1 mRNA downstream 123098 31632668 ~ 31749603 (+) False LOC110521078
XM_036976099.1 mRNA downstream 123098 31632668 ~ 31749603 (+) False LOC110521078
XM_036976100.1 mRNA downstream 123098 31632668 ~ 31749603 (+) False LOC110521078
TU387645 other upstream 57796 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 90016 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 126523 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2172333 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 2342276 29166518 ~ 29166996 (+) True G339830
TU387844 other downstream 276295 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1185416 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1962482 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1967123 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 2042557 33552127 ~ 33554003 (+) False G344647

Expression Profile