RNA id: TCONS_00030478


Basic Information

Item Value
RNA id TCONS_00030478
length 1637
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_015170
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5406236 ~ 5407872 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACTTCCTGTTTTTGTTCCACAAGTTACTCCAGAGTGGAAGAATGGCTGAATTAAACCGACAGCTCCAGGAATATCTGGCTCACTCTAAAAGCGGAGCGAAGACCATTTCCCAGTCCAGCTCCAGCACAACCATAGACGTGGATGGTGACGTTCCGGTGTCCGGCAGCTGGTTCGGCAGGTGGTCGAGCCCGTTCTCCGGATCCAGCAGCCGCGGAGCGACATCAGGCCAGGGCTCCAGCGGCGGCTTCTCGTGGCCGTGGTCTTCAGAACCGGACCCGTGTTTACCGGGTTTGAGTCGCTCTCAGAGACTGGTCGCCTTCGGGACGTGTATATTCTTCTCCGCTCTGTGCTTCGGACTGTCGGCGCTGTACGCTCCGTTACTTCTGCTGAAGGCTCGGAAGTTCGCGTTGCTCTGGTCTCTGGGCTCCGTGTTTGCTCTGCTTGGGGCGGCGATTCTCCGCGGACCCAGCAAACTCATAGCGACTCCCACTCCAGGCGCTGCCGTGTATCTGTGCTCTCTGGCGGGCACTCTTTACGCAGCGCTGAGCCTCCACAGCACGCTGCTTACCGCGCTCGGAGCCTGCCTCCAGATCGCCGCTATTGTGGGATACATCGTGGCTTTGTTGCCAGGTGGGAGTGCAGGGATGAGGTTTGTGGGCGGAATGGCAGCATCCGCTATTAAAAGGACCGTGACTGGTAAAACCATGCCCATTTGACGACAGATTTCACGGACTGGACAACAACTAACAAACTATCATTTGAAACTTGTGTTTTAAAGGAATACGTAATTTTATGGGGGGAAATAAGTTCTATTACAACTTCCATAGAGTTAAACAGTGGCGTTTTACCATTGTTAAAATCTATTCAGCCGATCTCCTTGtgtggcgggagcacttttagattagcttagcataaatcattgaatcggattagaccattagcatttcgcaCAAAAAATAATTGAGataattttctcatttaaaattgtactcttctgtagttacattgtgttatAAGATTGTCGGAAAAtctaaagttgctattttctaggctgatttgTCTAGAAACTATACTGTCATACTGGTGTAATAATCAATTAACTTTGCTGCCGTATCAGGACAGAAGCAGGCGCAATGATTTTATGCAGCTCTGTTACCCAGCATGGGACTTTTCAGGCTCAGCGTGATATCATTGATGCCGCTACGTAggtatttttaaaattgattgattaagcaagatgctaatggtctaatctgattccatgatctatgctaagctaagctaaaagtgcttccaccaGACACAGAGTTCAGCTGAATGGATTTATAAATGGTGAAATGTGtcagtttaactctaggggagcaGAAAAATGAGTGTTTCTTTATCTTTTTTGAGCGACTGGTCTGGTACAGCCACGATTGAACGTGAACACAGTAGCCTATACAGAGAAGTATAGTGTGAACAGCATTCTGTGGATGGAGATATCCTAATTTTGTAATTTGCACAGTGACAAGGACCATGTCAAATCAAGACagagtactactactactacttcccTTTTAATGTTTCCGAACTGCTTTTTTTTGAAACgtaactttataaataaacaatctcATGTGTTCTCTGTTATTCTA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070907-1 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D3 (SFT2 domain containing 3).

Ensembl:

ensembl_id ENSDART00000154167

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030473 lncRNA upstream 507946 4894856 ~ 4898290 (+) True XLOC_015166
TCONS_00030459 lncRNA upstream 1320815 4074412 ~ 4085421 (+) False XLOC_015160
TCONS_00030452 lncRNA upstream 1628890 3774742 ~ 3777346 (+) False XLOC_015156
TCONS_00033461 lncRNA upstream 1798835 3606030 ~ 3607401 (+) True XLOC_015155
TCONS_00033229 lncRNA upstream 1936223 3468101 ~ 3470013 (+) True XLOC_015149
TCONS_00030488 lncRNA downstream 318592 5726464 ~ 5729675 (+) False XLOC_015175
TCONS_00033230 lncRNA downstream 318830 5726702 ~ 5726906 (+) True XLOC_015175
TCONS_00033462 lncRNA downstream 323255 5731127 ~ 5736505 (+) True XLOC_015176
TCONS_00033463 lncRNA downstream 433236 5841108 ~ 5852829 (+) False XLOC_015178
TCONS_00033464 lncRNA downstream 511378 5919250 ~ 5923388 (+) True XLOC_015179
TCONS_00030476 mRNA upstream 16548 5371492 ~ 5389688 (+) False XLOC_015169
TCONS_00030475 mRNA upstream 94983 5300405 ~ 5311253 (+) True XLOC_015168
TCONS_00030474 mRNA upstream 125518 5245692 ~ 5280718 (+) True XLOC_015167
TCONS_00030472 mRNA upstream 997418 4402765 ~ 4408818 (+) True XLOC_015165
TCONS_00030471 mRNA upstream 1018233 4383061 ~ 4388003 (+) True XLOC_015164
TCONS_00030479 mRNA downstream 38215 5446087 ~ 5450198 (+) False XLOC_015171
TCONS_00030480 mRNA downstream 39010 5446882 ~ 5449744 (+) True XLOC_015171
TCONS_00030481 mRNA downstream 113799 5521671 ~ 5536927 (+) False XLOC_015172
TCONS_00030482 mRNA downstream 113800 5521672 ~ 5534079 (+) True XLOC_015172
TCONS_00030483 mRNA downstream 155205 5563077 ~ 5581772 (+) True XLOC_015173
TCONS_00030477 other upstream 16540 5380858 ~ 5389696 (+) True XLOC_015169
TCONS_00030468 other upstream 1117690 4281682 ~ 4288546 (+) True XLOC_015162
TCONS_00030445 other upstream 1838277 3565376 ~ 3567959 (+) True XLOC_015153
TCONS_00030434 other upstream 2231241 3174870 ~ 3174995 (+) True XLOC_015144
TCONS_00030432 other upstream 2383581 2994052 ~ 3022655 (+) True XLOC_015141
TCONS_00030484 other downstream 179623 5587495 ~ 5677726 (+) False XLOC_015174
TCONS_00030485 other downstream 193171 5601043 ~ 5677644 (+) False XLOC_015174
TCONS_00030507 other downstream 848575 6256447 ~ 6258795 (+) True XLOC_015187
TCONS_00030509 other downstream 959830 6367702 ~ 6367816 (+) True XLOC_015189
TCONS_00030520 other downstream 1724409 7132281 ~ 7138080 (+) False XLOC_015199

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00410927_00411601.mRNA True 1940 mRNA 0.41 1 CI01000003 410569 ~ 412508 (-)